KEGG   Taeniopygia guttata (zebra finch): 100225693Help
Entry
100225693         CDS       T01082                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    100225693 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100225693 (LIG4)
Enzymes [BR:tgu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100225693 (LIG4)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     100225693 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme LIG3_BRCT Tox-REase-9
Motif
Other DBs
NCBI-GeneID: 100225693
NCBI-ProteinID: XP_002198469
Ensembl: ENSTGUG00000010795
LinkDB All DBs
Position
1
AA seq 911 aa AA seqDB search
MASAPVSQPPKKTVASHVPFSDLCSTLERIQKSKSRPEKTKYFKDFLDSWRKFHDALHQK
EKDVTDSFYPAMRLILPHLERERMAYGIKETMLAKLYIELLSLPKDGKDAARLLNYRTPT
GSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLIT
QSTALEQKWLIRMIIKDLKLGVSQQTIFSVFHPDAVELHNVTTDLEKVCRQLHDPSVSLS
DVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNGF
DYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQSFMQKGNKFDIKRMVE
DSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHVVHKRSARTRKEVID
ALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPPG
NILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMTS
DMLEDLRNKAQGKLASKHLRIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKVS
NVFEDVEFCVMTGMGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIASN
KYDVVRAEWLLQCFQTKMLVPWQPAFMIHMCPDTKEHFAREYDCYGDSYTANTDVTQLKE
VFSRMKDRKAIPLDLIAELEERYWWNNCQLGMFRGSTIYVDCYAVVNEPQSKIPGTTLSI
RALELRFYGAKVVSHLEEGVSHVIVGEDCSRVEEMKALRRTFGKKFKIVSELWVTHSVEE
GVAKNENQYLV
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgcacctgtttcacagcctcctaaaaaaacagtggcctctcacgtgcctttt
tcagatctatgttctactctggagcgaatacagaagtccaaatctcgtccagagaaaacc
aagtatttcaaggattttctggattcctggaggaaattccatgatgcacttcatcagaaa
gagaaagatgtcacagattccttttacccagctatgcggcttattctcccacatttggaa
agagaaaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaactg
cttagtttaccaaaagatggaaaagatgctgcaaggcttttaaattacagaacgcctacg
ggctcacgtggagatgctggagattttgcaatgattgcgtacttcgtgctaaaacctagg
agccccaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcgattgct
aataataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaattacc
cagagcacagccctggaacaaaaatggcttatccgaatgattataaaggatctaaagctt
ggtgttagtcaacaaactatattttcagtttttcatcctgatgccgttgaattacacaat
gttactactgatttggaaaaagtttgcagacagcttcatgatccctctgtctcacttagt
gatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagatgtc
cagcaaattgagaaacaaatgagtaaccagacattctacatagaaaccaagctggatggt
gaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatgggttt
gactatactcagcagtttggtgcttcaccccttgaaggttcattaacaccatttattcat
aatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttacaat
cctgaggcacaaagttttatgcaaaaaggaaacaaatttgacataaaaagaatggtggag
gattctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcagaag
ctggggcatgaagtactaagcaaaagatatgaaatcttaagtagtgtgtttacccctgta
aagggcaggatacatgttgtccataagagaagtgctagaacaagaaaagaagtaattgat
gctttaaatgaagccatagataacagagaggaaggaattatggtgaaagatcccatgtcc
acctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtcaat
ggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtctcgt
ggtggaatgatgtctcattttctatgcgctgttgcagagacgccccctccgaatgaaaaa
ccgaccattttccactccatttgtcgtgttggctctggctatactatgaaagagttgtat
gatctaggcttgaaactggctaaacactggaagccctaccataggaaggaccctcctggt
aacattttgtgtggagctgaaaaacctgaaatgtacattgaaccttgcaactctgtcata
gttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtactttg
agattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgacttca
gacatgttagaagacctcagaaacaaagcacaaggaaagctggcatctaagcaccttcgt
atcgatgagtatgatgagccacatgagaaaaaaaggaaaacagtctcaaaggtgaggaag
gtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtttca
aatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaagtct
gagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccggggccagag
acttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttccaac
aaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctggtg
ccttggcaaccagcctttatgattcacatgtgtcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagttacacagcaaatacagatgttacacagctcaaggaa
gtgttctcaagaatgaaagacagaaaggcaatacctctggacttgattgcagagctagaa
gaacgttactggtggaacaattgtcagctcggtatgttcagaggaagcactatttatgtg
gactgttatgctgttgttaatgagcctcaaagcaaaatccctggaactacactttcaatt
agagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagaaggtgtt
tcccatgtcattgtaggagaagattgttcacgggtagaggagatgaaagcactcaggaga
acatttgggaaaaaatttaaaattgtatccgagctgtgggtgacgcactcagtggaggaa
ggagtcgcaaagaatgaaaatcagtacttagtttaa

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