KEGG   Thermococcus sp. 4557: GQS_07890Help
Entry
GQS_07890         CDS       T01588                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
the  Thermococcus sp. 4557
Pathway
the03030  DNA replication
the03410  Base excision repair
the03420  Nucleotide excision repair
the03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:the00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GQS_07890
   03410 Base excision repair
    GQS_07890
   03420 Nucleotide excision repair
    GQS_07890
   03430 Mismatch repair
    GQS_07890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:the03032]
    GQS_07890
   03400 DNA repair and recombination proteins [BR:the03400]
    GQS_07890
Enzymes [BR:the01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GQS_07890
    6.5.1.6  DNA ligase (ATP or NAD+)
     GQS_07890
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     GQS_07890
DNA replication proteins [BR:the03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    GQS_07890
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     GQS_07890
DNA repair and recombination proteins [BR:the03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     GQS_07890
   NER (nucleotide excision repair)
    Other NER factors
     GQS_07890
   MMR (mismatch exicision repair)
    Other MMR factors
     GQS_07890
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 TPR_1
Motif
Other DBs
NCBI-ProteinID: AEK73474
UniProt: G0HLK1
LinkDB All DBs
Position
1501037..1502716
Genome map
AA seq 559 aa AA seqDB search
MKYAELADLYRRLEKTTLKTLKTKFVSDFLKKAPDELLDIIPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVPEREIENSVRDTGDLGESVALALKKKKQKSFFSQPLTIKRVYDTF
MKIAEASGQGSQDRKLKYLANLFMDAQPEEGKYLARTVLGTMRTGVAEGLMRDAIASAFG
VKAELVERAYMLTSDFGYVARVAKLEGNEGLSKVRIQVGKPIRPMLAQNAANVKEALVEM
GGKAAFEVKYDGARVQVHKDGDRVVIYSRRLENVTRSIPEVVDAVLESVKPEKAIVEGEL
VAVGEGGKPRPFQYVLRRFRRKYNIEEMVEKIPLELNLFDVLYVDGDGMIDTPFSERRKK
LEEIISQNERIRLAEQLVTTSADEAEEFYQRALELGHEGLMAKRLDSVYEPGNRGKKWLK
IKPTMEDLDLVIIGAEWGEGRRAHLLGSFLVAAFDPHSGEFVPVGKVGSGFTDEDLAEFT
RMLKPLIVREEGKYVEIEPKVVIQVTYQEIQKSPKYESGFALRFPRYVALREDKSPEEAD
TIERIAQLYEFQERFKAKR
NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt
atgaaatacgccgaactggccgacctttacagacgcctggaaaaaacgaccctcaaaacc
ctgaagaccaaattcgtctccgattttctcaagaaggcacccgatgaactcctcgacata
atcccctatctcattctgggaaaggtctttcctgactgggacgagagagagcttggagtc
ggtgagaagctcctcataaaggccgtttccatggccaccggcgttcccgagcgggagata
gagaactccgtgagggacaccggcgacctcggtgagagcgttgccctggccctgaagaag
aaaaaacagaagagcttcttctcccagccgctgaccataaagcgcgtttacgacaccttc
atgaagatagccgaggccagcgggcagggaagccaggacaggaagctgaagtacctcgcc
aacctcttcatggacgcccagccggaggagggcaagtatctcgccaggacggttctcgga
accatgcgcaccggtgttgcggagggactcatgagggacgccatagcgagcgcattcggc
gtcaaggccgagctcgtcgagagggcctacatgctcacgagcgacttcggctacgtcgcg
agggtggccaagctcgagggcaacgagggcctctcaaaggtcagaatccaggtgggcaag
cccataaggccgatgctcgcccagaacgcggccaacgtgaaggaagctttggtagagatg
ggcggaaaggccgcgtttgaggtaaagtacgatggagcgcgcgttcaggttcacaaagac
ggcgatagggttgttatatactcccgcaggctggagaacgtgacgaggtccatcccggag
gtcgttgatgccgtcctggagagcgtaaagcccgagaaggccatcgtggagggtgaactc
gttgccgtcggcgagggtgggaagcccaggcccttccagtacgtgctgaggcgcttcagg
aggaagtacaacatcgaggagatggtggagaagatcccccttgagctgaacctcttcgac
gtcctctacgttgacggcgatgggatgatagacacgcccttctccgagcgcaggaagaag
ctggaagagataatctcccagaatgagcggataaggctggctgaacagctggtaaccacc
agcgccgacgaggctgaggagttctaccagcgcgcccttgagctcggccacgaggggctg
atggcgaagcgcctggattcggtttacgagcccggaaacaggggcaagaagtggctcaag
ataaagcccacgatggaggacctcgacctcgtcataatcggcgccgaatggggcgaggga
aggcgtgcacacctcctcggctccttcctggtcgcggccttcgacccgcacagcggcgag
ttcgtcccggtcggaaaggtcgggagcggcttcaccgatgaagaccttgccgagttcacc
aggatgctcaagcccctcatagtccgcgaggagggcaagtacgtcgagatagagccgaag
gtcgttattcaggtcacctaccaggagatacagaagagcccgaagtacgagagcggcttt
gcgctgaggttcccacgctacgtggccctgagggaggacaagagtcccgaggaggcggac
acgatcgagcgcatagcccagctctacgagttccaggagaggttcaaggcgaagaggtga

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