KEGG   Thermaerobacter sp. PB12/4term: DYI95_011520
Entry
DYI95_011520      CDS       T06418                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
thep  Thermaerobacter sp. PB12/4term
Pathway
thep03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:thep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DYI95_011520 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:thep03021]
    DYI95_011520 (rpoC)
   03400 DNA repair and recombination proteins [BR:thep03400]
    DYI95_011520 (rpoC)
Enzymes [BR:thep01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DYI95_011520 (rpoC)
Transcription machinery [BR:thep03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DYI95_011520 (rpoC)
DNA repair and recombination proteins [BR:thep03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DYI95_011520 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: QIA28058
UniProt: A0A8T8DB13
LinkDB
Position
complement(2733474..2737256)
AA seq 1260 aa
MKTIESFQDRIGDGLAQDVNHFDAIRISLASPEKIREWSKGEVKKPETINYRTLKPERDG
LFCERIFGPTKDWECHCGKYKRVRYKGIVCDRCGVEVTQAKVRRERMGHIELAAPVCHIW
YFKGIPSRLGLLLDMSPRALERVLYFAAYVVIDPGETALMEKQLLTETEYREAREKYGNA
FRAGMGAEAVKELLERIDLDELAEELRAEIRNSSGQRRLRAVRRLEVVEAFRKSGNDPTW
MILEAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEK
RMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIV
VGPRLKMHQCGLPKEMALELFKPFVMKRLVQLGYAHNIKSAKRMVERVRDEVWDVLEEVI
KEHPVLLNRAPTLHRLGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEA
QAEARVLMMSIHNLLNPKDGKPVVTPTQDMVLGSFYLTLEREGARGEGRVFSSADEVLLA
YQLKQVEVHARIKARVETAQGRRLLETTVGRVIFNEALPVELRFVNEVVDKKKLGDIVAE
SFRRLGYAKTVEMLDAVKELGFRFATQAGASIAIGDVKIPERKAEYIAEAEAQVEQVESQ
YRRGLISAEERYQKIIDIWNRTKDKVTQELTQVLDYFNPVYMMAISGARGNLTQIAQLGG
MRGLMTDPSGRIIEQPVRANFREGLTVLEYFTSTHGARKGLADTALRTADSGYLTRRLVD
VSQDVIVREEDCGTTEGITVSEIRDGEEVIESLQDRIVGRIAVRDVVHPGTGEVIVPAGE
EIDEDRAQAIVDAGIEQVEIRSVLACRSRYGVCARCYGRDLATGKMVNIGEAVGTIAAQS
IGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELFEARKPKGQAVMTEVGGTVKVVETKQR
REVRVISDDGTWEAYTVPFGARLLVRDGDRVEPGDVLTEGPINPHDILKVRGVQAVQLYL
LQEVQKVYRMQGVDINDKHIEIIIRQMMRKVKVEDAGDTDLLPGGLVDVFELEEANAQLP
EGARPATARPVLLGITKAALATESFLSAASFQETTRVLTEAAIKGKTDPLLGLKENVIIG
KLIPAGTGMSRYRRMQILVEGRTEREVMAQARRSETLAARALGEDGAVAAAGDGALDGTA
NGHVLPQALAAGSDGAALLEEAAGTAGPGACDGPLAEEPGAGEGPEAGDAGVAGDEPAAE
NT seq 3783 nt   +upstreamnt  +downstreamnt
atgaagaccatcgagagcttccaggaccgcatcggcgacgggcttgcccaggacgtcaac
cactttgacgccatccgcatcagcctggcctcgcccgagaagatccgggagtggtccaag
ggcgaggtgaagaagcccgagaccatcaactaccgcaccctgaagccggagcgggacggc
ctcttctgcgagcgcatcttcggcccgaccaaggactgggagtgccactgcggcaagtac
aagcgcgtccgctacaagggcatcgtctgcgaccgctgcggcgtcgaggtgacgcaggcc
aaggtccgccgcgagcgcatggggcacatcgagctggcggcgcccgtctgccacatctgg
tacttcaagggcatcccctcgcggctgggcctgcttctggacatgtcgccccgggccctg
gagcgggtgctctacttcgccgcgtacgtggtcatcgacccgggcgagacggcgctgatg
gagaagcagctgctgacggagacggagtaccgggaggcccgggagaagtacggcaacgcc
ttccgcgccggcatgggcgccgaggcggtcaaggagcttctggagcgcatcgacctggac
gaactggccgaggagctgcgggccgagatccgcaactccagcggccagcgccgcctgcgg
gccgtccggcggctggaggtggtcgaagccttccgcaagtcgggcaacgacccgacctgg
atgatcctcgaggccatcccggtcatcccgcccgacctgcggcccatggtccagctggac
ggcggccgcttcgccacctccgacctcaacgacctctaccggcgggtgatcaaccgcaac
aaccggctcaagcggctgctggacctgggcgcgccggacatcatcgtccgcaacgagaag
cgcatgctgcaggaggcggtggacgccctgatcgacaacggccggcgcggccggccggtc
acgggtccgggtaaccggcccctcaagtccctgtccgacatgctcaagggcaagcagggc
cgcttccgccagaacctgctgggcaagcgcgtggactactcgggccgctcggtcatcgtg
gtgggcccgcggctcaagatgcaccagtgcggcttgccgaaggagatggcgctggagctg
ttcaagcccttcgtcatgaagcggctggtgcagctgggttacgcccataacatcaagagc
gccaagcgcatggtggagcgggtgcgggacgaggtctgggacgtcctggaggaggtcatc
aaggagcaccccgtcctgctcaaccgcgcgcccaccctgcaccgcctgggcatccaggcc
ttcgagccggtgctggtggagggccgcgccatccagatccacccgctggtctgcacggcg
tacaacgccgacttcgacggcgaccagatggcggtgcacgtgcccctgtcggcggaggcc
caggccgaggcccgggtcctcatgatgtcgatccacaacctgctgaaccccaaggacggc
aagcccgtggtgacgcccacccaggacatggtgctgggttccttctacctgaccctggag
cgggagggcgcccggggcgagggccgggtcttcagctcggccgatgaggtgctgctggcc
taccagctcaagcaggtggaggtccacgcccggatcaaggcgcgggtggagacggcccag
gggcggcggttgctggagaccacggtgggccgggtgatcttcaacgaggccctgcccgtg
gaactccggttcgtcaacgaggtggtcgacaagaagaagctgggcgacatcgtggccgag
agcttccggcgcctgggttacgccaagacggtggagatgctggacgccgtcaaggaactg
ggcttccgcttcgccacccaggccggggcgtccatcgccatcggggacgtgaagatcccc
gagcgcaaggccgagtacatcgccgaggccgaagcccaggtggagcaggtggagagccag
taccgccggggcctgatcagcgccgaagagcgctatcagaagatcatcgacatctggaac
cggacgaaggacaaggtgacccaggagctgacccaggtcctggactacttcaacccggtc
tacatgatggccatctccggcgcccggggcaacctgacccagatcgcccagctgggcggc
atgcgcgggctgatgaccgacccctcgggccggatcatcgagcagccggtgcgggccaac
ttccgggaaggcctcacggtcttggagtacttcacctccacccacggcgcccgcaagggc
ctggccgacacggccctgcgcacggcggactccggttacctgacccggcgcctggtggac
gtgtcccaggacgtcatcgtccgggaggaagactgcggcaccaccgagggcatcacggtg
tcggagatccgcgacggggaggaagtgatcgaatccctgcaggaccgcatcgtggggcgc
atcgccgtccgcgacgtggtgcaccccgggacgggcgaggtcatcgtgcctgcgggtgag
gagatcgacgaggaccgggcccaggccatcgtggacgccggcatcgagcaggtggagatc
cgctcggtcctggcctgccgctcgcgctacggcgtctgcgcccgctgctacgggcgcgac
ctggcgacgggcaagatggtcaacatcggcgaggcggtggggaccatcgccgcccagtcc
atcggcgagccgggcacccagctgaccatgcgcaccttccacaccggcggcgtggccggc
gaggacatcacccagggcctgccgcgggtcgaggagctcttcgaggcccgcaagcccaag
ggccaggcggtgatgacggaggtcggcggcacggtcaaggtagttgagaccaagcagcgc
cgcgaggtgcgggtcatcagcgacgacggcacctgggaggcctacaccgtgcccttcggt
gcccgcctcctggtccgcgacggggaccgggtggaacccggcgacgtgctgaccgagggg
cctatcaacccccacgacatcctcaaggtgcggggcgtgcaggccgtccagctctacctg
ctgcaggaagtccagaaggtctatcgcatgcagggcgtggacatcaacgacaagcacatc
gagatcatcatccgccagatgatgcgcaaggtgaaggtggaggacgccggggacaccgac
ctcttgccgggcggcctggtcgacgtctttgagctggaggaggccaacgcccagctgccc
gagggagcgcggccggccacggcccggccggtgctgctcggcatcaccaaggcggcgctg
gccacggagtccttcctctccgcggcctccttccaggaaaccacccgggtcctgacggag
gcggccatcaaggggaagaccgaccccctgctgggcctcaaggagaacgtcatcatcggc
aagctgatcccggccggaaccgggatgagccgctatcgccggatgcagatcctggtcgaa
ggcaggaccgagcgggaggtcatggcccaggcccgccgcagtgagaccctggcggcccgc
gccctgggcgaggacggcgcggtggccgccgccggcgacggggcgctggacggcaccgcc
aacgggcacgtgctcccccaggccctggccgcgggcagtgacggggccgcgctgctggag
gaggctgccggcaccgccggtccgggtgcgtgcgacggcccgctggcggaggaacccggc
gccggggaaggcccggaggccggcgatgccggggtggccggcgacgagcccgccgcggaa
tga

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