Thermaerobacter sp. PB12/4term: DYI95_011520
Help
Entry
DYI95_011520 CDS
T06418
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thep
Thermaerobacter sp. PB12/4term
Pathway
thep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DYI95_011520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thep03021
]
DYI95_011520 (rpoC)
03400 DNA repair and recombination proteins [BR:
thep03400
]
DYI95_011520 (rpoC)
Enzymes [BR:
thep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DYI95_011520 (rpoC)
Transcription machinery [BR:
thep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DYI95_011520 (rpoC)
DNA repair and recombination proteins [BR:
thep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DYI95_011520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QIA28058
UniProt:
A0A8T8DB13
LinkDB
All DBs
Position
complement(2733474..2737256)
Genome browser
AA seq
1260 aa
AA seq
DB search
MKTIESFQDRIGDGLAQDVNHFDAIRISLASPEKIREWSKGEVKKPETINYRTLKPERDG
LFCERIFGPTKDWECHCGKYKRVRYKGIVCDRCGVEVTQAKVRRERMGHIELAAPVCHIW
YFKGIPSRLGLLLDMSPRALERVLYFAAYVVIDPGETALMEKQLLTETEYREAREKYGNA
FRAGMGAEAVKELLERIDLDELAEELRAEIRNSSGQRRLRAVRRLEVVEAFRKSGNDPTW
MILEAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEK
RMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIV
VGPRLKMHQCGLPKEMALELFKPFVMKRLVQLGYAHNIKSAKRMVERVRDEVWDVLEEVI
KEHPVLLNRAPTLHRLGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEA
QAEARVLMMSIHNLLNPKDGKPVVTPTQDMVLGSFYLTLEREGARGEGRVFSSADEVLLA
YQLKQVEVHARIKARVETAQGRRLLETTVGRVIFNEALPVELRFVNEVVDKKKLGDIVAE
SFRRLGYAKTVEMLDAVKELGFRFATQAGASIAIGDVKIPERKAEYIAEAEAQVEQVESQ
YRRGLISAEERYQKIIDIWNRTKDKVTQELTQVLDYFNPVYMMAISGARGNLTQIAQLGG
MRGLMTDPSGRIIEQPVRANFREGLTVLEYFTSTHGARKGLADTALRTADSGYLTRRLVD
VSQDVIVREEDCGTTEGITVSEIRDGEEVIESLQDRIVGRIAVRDVVHPGTGEVIVPAGE
EIDEDRAQAIVDAGIEQVEIRSVLACRSRYGVCARCYGRDLATGKMVNIGEAVGTIAAQS
IGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELFEARKPKGQAVMTEVGGTVKVVETKQR
REVRVISDDGTWEAYTVPFGARLLVRDGDRVEPGDVLTEGPINPHDILKVRGVQAVQLYL
LQEVQKVYRMQGVDINDKHIEIIIRQMMRKVKVEDAGDTDLLPGGLVDVFELEEANAQLP
EGARPATARPVLLGITKAALATESFLSAASFQETTRVLTEAAIKGKTDPLLGLKENVIIG
KLIPAGTGMSRYRRMQILVEGRTEREVMAQARRSETLAARALGEDGAVAAAGDGALDGTA
NGHVLPQALAAGSDGAALLEEAAGTAGPGACDGPLAEEPGAGEGPEAGDAGVAGDEPAAE
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccatcgagagcttccaggaccgcatcggcgacgggcttgcccaggacgtcaac
cactttgacgccatccgcatcagcctggcctcgcccgagaagatccgggagtggtccaag
ggcgaggtgaagaagcccgagaccatcaactaccgcaccctgaagccggagcgggacggc
ctcttctgcgagcgcatcttcggcccgaccaaggactgggagtgccactgcggcaagtac
aagcgcgtccgctacaagggcatcgtctgcgaccgctgcggcgtcgaggtgacgcaggcc
aaggtccgccgcgagcgcatggggcacatcgagctggcggcgcccgtctgccacatctgg
tacttcaagggcatcccctcgcggctgggcctgcttctggacatgtcgccccgggccctg
gagcgggtgctctacttcgccgcgtacgtggtcatcgacccgggcgagacggcgctgatg
gagaagcagctgctgacggagacggagtaccgggaggcccgggagaagtacggcaacgcc
ttccgcgccggcatgggcgccgaggcggtcaaggagcttctggagcgcatcgacctggac
gaactggccgaggagctgcgggccgagatccgcaactccagcggccagcgccgcctgcgg
gccgtccggcggctggaggtggtcgaagccttccgcaagtcgggcaacgacccgacctgg
atgatcctcgaggccatcccggtcatcccgcccgacctgcggcccatggtccagctggac
ggcggccgcttcgccacctccgacctcaacgacctctaccggcgggtgatcaaccgcaac
aaccggctcaagcggctgctggacctgggcgcgccggacatcatcgtccgcaacgagaag
cgcatgctgcaggaggcggtggacgccctgatcgacaacggccggcgcggccggccggtc
acgggtccgggtaaccggcccctcaagtccctgtccgacatgctcaagggcaagcagggc
cgcttccgccagaacctgctgggcaagcgcgtggactactcgggccgctcggtcatcgtg
gtgggcccgcggctcaagatgcaccagtgcggcttgccgaaggagatggcgctggagctg
ttcaagcccttcgtcatgaagcggctggtgcagctgggttacgcccataacatcaagagc
gccaagcgcatggtggagcgggtgcgggacgaggtctgggacgtcctggaggaggtcatc
aaggagcaccccgtcctgctcaaccgcgcgcccaccctgcaccgcctgggcatccaggcc
ttcgagccggtgctggtggagggccgcgccatccagatccacccgctggtctgcacggcg
tacaacgccgacttcgacggcgaccagatggcggtgcacgtgcccctgtcggcggaggcc
caggccgaggcccgggtcctcatgatgtcgatccacaacctgctgaaccccaaggacggc
aagcccgtggtgacgcccacccaggacatggtgctgggttccttctacctgaccctggag
cgggagggcgcccggggcgagggccgggtcttcagctcggccgatgaggtgctgctggcc
taccagctcaagcaggtggaggtccacgcccggatcaaggcgcgggtggagacggcccag
gggcggcggttgctggagaccacggtgggccgggtgatcttcaacgaggccctgcccgtg
gaactccggttcgtcaacgaggtggtcgacaagaagaagctgggcgacatcgtggccgag
agcttccggcgcctgggttacgccaagacggtggagatgctggacgccgtcaaggaactg
ggcttccgcttcgccacccaggccggggcgtccatcgccatcggggacgtgaagatcccc
gagcgcaaggccgagtacatcgccgaggccgaagcccaggtggagcaggtggagagccag
taccgccggggcctgatcagcgccgaagagcgctatcagaagatcatcgacatctggaac
cggacgaaggacaaggtgacccaggagctgacccaggtcctggactacttcaacccggtc
tacatgatggccatctccggcgcccggggcaacctgacccagatcgcccagctgggcggc
atgcgcgggctgatgaccgacccctcgggccggatcatcgagcagccggtgcgggccaac
ttccgggaaggcctcacggtcttggagtacttcacctccacccacggcgcccgcaagggc
ctggccgacacggccctgcgcacggcggactccggttacctgacccggcgcctggtggac
gtgtcccaggacgtcatcgtccgggaggaagactgcggcaccaccgagggcatcacggtg
tcggagatccgcgacggggaggaagtgatcgaatccctgcaggaccgcatcgtggggcgc
atcgccgtccgcgacgtggtgcaccccgggacgggcgaggtcatcgtgcctgcgggtgag
gagatcgacgaggaccgggcccaggccatcgtggacgccggcatcgagcaggtggagatc
cgctcggtcctggcctgccgctcgcgctacggcgtctgcgcccgctgctacgggcgcgac
ctggcgacgggcaagatggtcaacatcggcgaggcggtggggaccatcgccgcccagtcc
atcggcgagccgggcacccagctgaccatgcgcaccttccacaccggcggcgtggccggc
gaggacatcacccagggcctgccgcgggtcgaggagctcttcgaggcccgcaagcccaag
ggccaggcggtgatgacggaggtcggcggcacggtcaaggtagttgagaccaagcagcgc
cgcgaggtgcgggtcatcagcgacgacggcacctgggaggcctacaccgtgcccttcggt
gcccgcctcctggtccgcgacggggaccgggtggaacccggcgacgtgctgaccgagggg
cctatcaacccccacgacatcctcaaggtgcggggcgtgcaggccgtccagctctacctg
ctgcaggaagtccagaaggtctatcgcatgcagggcgtggacatcaacgacaagcacatc
gagatcatcatccgccagatgatgcgcaaggtgaaggtggaggacgccggggacaccgac
ctcttgccgggcggcctggtcgacgtctttgagctggaggaggccaacgcccagctgccc
gagggagcgcggccggccacggcccggccggtgctgctcggcatcaccaaggcggcgctg
gccacggagtccttcctctccgcggcctccttccaggaaaccacccgggtcctgacggag
gcggccatcaaggggaagaccgaccccctgctgggcctcaaggagaacgtcatcatcggc
aagctgatcccggccggaaccgggatgagccgctatcgccggatgcagatcctggtcgaa
ggcaggaccgagcgggaggtcatggcccaggcccgccgcagtgagaccctggcggcccgc
gccctgggcgaggacggcgcggtggccgccgccggcgacggggcgctggacggcaccgcc
aacgggcacgtgctcccccaggccctggccgcgggcagtgacggggccgcgctgctggag
gaggctgccggcaccgccggtccgggtgcgtgcgacggcccgctggcggaggaacccggc
gccggggaaggcccggaggccggcgatgccggggtggccggcgacgagcccgccgcggaa
tga
DBGET
integrated database retrieval system