KEGG   Thermococcus sp. 5-4: CDI07_08445Help
Entry
CDI07_08445       CDS       T05088                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
thh  Thermococcus sp. 5-4
Pathway
thh03030  DNA replication
thh03410  Base excision repair
thh03420  Nucleotide excision repair
thh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:thh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CDI07_08445
   03410 Base excision repair
    CDI07_08445
   03420 Nucleotide excision repair
    CDI07_08445
   03430 Mismatch repair
    CDI07_08445
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:thh03032]
    CDI07_08445
   03400 DNA repair and recombination proteins [BR:thh03400]
    CDI07_08445
Enzymes [BR:thh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CDI07_08445
    6.5.1.6  DNA ligase (ATP or NAD+)
     CDI07_08445
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CDI07_08445
DNA replication proteins [BR:thh03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CDI07_08445
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CDI07_08445
DNA repair and recombination proteins [BR:thh03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CDI07_08445
   NER (nucleotide excision repair)
    Other NER factors
     CDI07_08445
   MMR (mismatch exicision repair)
    Other MMR factors
     CDI07_08445
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 TPR_1
Motif
Other DBs
NCBI-ProteinID: ASA78322
UniProt: A0A1Z2TPE1
LinkDB All DBs
Position
complement(1526095..1527774)
Genome map
AA seq 559 aa AA seqDB search
MKYAELADLYRRLEKTTLKTLKTKFVSDFLKKAPDELLEIIPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVPEREIENSVRDTGDLGESVALALKKKKQKSFFSQPLTIKRVYDTF
VKIAEASGQGSQDRKLKYLANLFMDAQPEEGKYLARTVLGTMRTGVAEGLMRDAIASAFG
VKAELVERAYMLTSDFGYVARVAKLEGNEGLSKVRIQVGKPIRPMLAQNAANVKEALVEM
GGKAAFEIKYDGARVQVHKDGNRVVIYSRRLENVTKSIPEVVDAVLESVKPEKAIVEGEL
VAVGEGGKPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDVLYVDGDGMIDTPFSERRKK
LEEIISPNERIRLAEQLVTTSADEAEEFYQRALELGHEGLMAKRLDSVYEPGNRGKKWLK
IKPTMEDLDLVIIGAEWGEGRRAHLLGSFLVAAFDPHSGQFVPVGKVGSGFTDEDLAEFT
KMLKPLIIREEGKYVEIEPKVVIQVTYQEIQKSPKYESGFALRFPRYVALREDKSPEEAD
TIERIAQLYEFQERFKAKR
NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt
atgaaatacgccgaactggccgacctttacagacgcctggaaaaaacgaccctcaagacc
ctcaagaccaaattcgtctctgattttctcaagaaggcacccgatgaactcctcgagata
atcccctacctaatcctcggaaaggtctttccggactgggacgagagagagcttggagtc
ggcgagaagctcctcataaaggccgtttccatggctaccggcgttcccgagcgggagata
gagaactccgtgagggacaccggcgacctcggtgagagcgttgccctggccctgaagaag
aaaaagcagaagagcttcttctcccagccgctgaccataaagcgcgtttacgacaccttc
gtgaagatagccgaggccagcgggcagggaagtcaggacaggaagctgaagtacctcgcc
aacctcttcatggacgctcagccagaggagggcaagtacctcgccaggacggttctcgga
accatgcgcaccggcgttgcggagggactcatgagggacgccatagcgagcgcattcggc
gtcaaggccgagctcgttgagagggcctacatgctcacgagcgacttcggctacgtcgcg
agggtggccaagctcgagggcaacgaaggcctttcaaaggtcagaatccaggtgggcaag
cccataaggccgatgctcgctcagaacgcggccaacgtgaaggaagctttggtagagatg
ggtggaaaggcggcgttcgagataaagtacgatggcgcacgcgttcaggttcacaaagac
ggcaatagggttgttatatactcccgcaggctggagaatgtgacgaagtccatcccggag
gttgttgatgccgtcctggaaagcgtaaagcccgagaaggctatcgtggagggcgaactc
gttgccgtcggcgagggcgggaagcccaggcccttccagtacgtgctgaggcgcttcagg
agaaagtacaacatcgaggagatgatagagaaaatccccctcgagctgaacctcttcgac
gtcctctacgttgacggcgatgggatgatagacacgcccttctccgagcgcaggaaaaag
ctggaagagataatctccccaaatgagcggataaggctggctgagcagctggtaaccacc
agcgctgacgaggcggaggagttctaccagcgcgcccttgagctcggccacgaggggctg
atggcgaagcgcctggattcggtttacgagcccggaaacaggggcaagaagtggctcaag
ataaagcccacgatggaggatctagacctcgtcataatcggcgccgaatggggtgaggga
aggcgtgcacacctccttggctccttcctggttgcggccttcgacccgcacagcggccag
ttcgtcccggtcggaaaggtcgggagcggcttcaccgatgaagacttggccgagttcacc
aagatgctcaagcccctcataatccgcgaggagggcaagtacgtcgagatagagccaaag
gtcgttattcaggtcacctaccaggagatacagaagagcccgaagtacgagagcggcttt
gcccttcgcttcccgcgctacgtcgctttgagggaggacaagagtcccgaggaagcggac
acgatcgagcgcatagcccagctctacgagttccaggagaggttcaaggcgaagaggtga

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