Thermosipho sp. 1063: BG95_08090
Help
Entry
BG95_08090 CDS
T04625
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thp
Thermosipho sp. 1063
Pathway
thp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG95_08090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thp03019
]
BG95_08090
03016 Transfer RNA biogenesis [BR:
thp03016
]
BG95_08090
Enzymes [BR:
thp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BG95_08090
Messenger RNA biogenesis [BR:
thp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BG95_08090
Transfer RNA biogenesis [BR:
thp03016
]
Prokaryotic type
tRNA degradation factors
BG95_08090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
OB_Dis3
LPD13
Motif
Other DBs
NCBI-ProteinID:
APT72811
UniProt:
A0A1L7BGV7
LinkDB
All DBs
Position
complement(1555737..1557851)
Genome browser
AA seq
704 aa
AA seq
DB search
MITKRKVLNFINSKNYKPMLQKELYKALGLKNKTEKKELRKILNDLLYEGKLFKDSKGRY
KPISKNMVIGTIEFTRNGTMAFVWTESGEEIAIPAEKAGRAIHKDKVIVEIEGKWYDIPE
GRVIKIIDHGLKKVVGTFQPIGRAAFLIPDDPKIQYDFYIPIEFFNNAKPGQKVVGKILK
YPTPTKNPVAKIVEVLGYADDPATDFPTVIVKHDINISFPNEVMQEASKIPDKVFSRDIK
NRKDFRNELVVTIDGPDAKDFDDAVSVKKLKNGNYLLGVHIADVSHYVKEDSFLDKEAFK
RGTSIYLIDRVIPMLPFKLSHGICSLVQGEDRLVMSLTMEINKDGKVVDFEVTKGVIRSN
RRLVYDDVNALFEGKEEAIKKIGDLRKELLLMKELKDILRKARKERGAILDIEGGEVKII
LDEKGHAVDIIPRKRGEAEVIIEEFMIKANETIAEIFHHLDLPFVYRVHEQPDPDTIIQL
KNYLAALGIEFKVPKKIQPKVLQTLLEKTEGHPLRGSIEKLLVRSMKRAIYSATNIGHFG
LASYAYTHFTSPIRRYPDLIVHRLIKKFLTDNKKISKKQLKKLNEKLSKVAIHSSKRERI
ADEAEWDYIALKKIDYISNHIGEVFDVVVTSVTKFGMFVEIIDKNISGLIHVSTLDDYFL
YDPEKSILIGQHTGKVYKIGDKLRAKVVNANKTRMQIDFEISEA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgattaccaaaagaaaagtattaaattttatcaattcaaaaaattataaacctatgctt
caaaaagaattatataaagcactaggcttaaaaaataaaaccgaaaaaaaagaactaaga
aaaatactaaatgatcttttatacgaaggaaaattattcaaagacagtaaaggaagatac
aaaccaataagcaaaaatatggttattggtactatagaattcacaagaaatggtacaatg
gcatttgtttggacagaatctggagaagaaattgctattcccgccgaaaaagcagggaga
gctatacataaagacaaggtaatagtagaaatagagggaaaatggtatgacatacctgaa
ggaagagtaataaaaataattgatcacgggttaaaaaaggtagtgggaacatttcaacct
attggaagagctgcatttttaatcccagatgatccaaaaattcaatatgatttttatatc
cccatagaattttttaataatgcaaaacctggtcaaaaagtagtaggaaagattttaaaa
tatcctacccctacgaaaaatcccgttgcaaaaattgtagaagtattaggttatgccgat
gatcctgcaactgattttccaactgtaatcgtaaaacatgacataaatatatcttttcca
aacgaagttatgcaagaagcatcaaaaattcctgataaagtcttttcaagagacattaaa
aatagaaaagattttagaaatgaattagtagtaacaattgatggaccagatgcaaaggat
tttgatgatgctgtaagtgtaaaaaaattaaaaaatggaaactacctacttggagtacat
attgcagatgtttcacactatgtaaaagaagatagctttctagacaaagaagcgtttaaa
cgcggaacaagtatttatttaatcgatagagtcattccaatgttaccttttaaattatca
catggaatttgtagtttggtccaaggcgaagatcgtttggtaatgtcgttaacaatggaa
atcaacaaagatggtaaagtagttgattttgaagttacaaaaggagtaataagaagcaat
agaagacttgtatacgacgatgtaaacgctcttttcgaaggaaaagaagaagcaataaaa
aaaattggagacttaagaaaagaattattgctaatgaaagaattaaaagatattttaaga
aaagctcgaaaagaaagaggggcaattttagacatagaaggtggagaagttaagattatt
ctagatgaaaaagggcacgcagttgatattatcccaaggaaaaggggagaagcagaagtt
atcatagaagaatttatgataaaagcaaatgaaaccatcgcagaaatttttcatcatctt
gatttgccatttgtatatagagtacatgaacaacctgatccagatacaattatccaatta
aaaaattatttagcagctttagggatagaatttaaagttccaaaaaagatacaacccaaa
gtattacaaacattactcgaaaaaaccgaaggacatccattaagggggagtatagaaaaa
ctccttgtccgttcaatgaaacgtgcaatctattcagctacaaacattggacattttgga
cttgcctcatatgcatacacacattttacctctccgataaggagatatccagatcttatt
gtccacagacttattaaaaaattcttaactgacaacaaaaaaatatcaaaaaagcaactc
aaaaaattaaatgagaagctatcaaaagttgccatacattcaagtaaaagagagagaata
gcagatgaagctgagtgggattatattgccttgaaaaaaattgactatatatcaaatcac
attggtgaagttttcgatgtagttgtaacttccgtcacaaaatttggaatgttcgtagaa
ataatagataaaaacatatcaggattaattcatgtttctacactggatgattatttctta
tatgatcccgaaaaaagtatcttaattggtcaacatacaggaaaagtgtacaaaatagga
gataaattaagggcaaaagttgtaaatgctaacaaaactagaatgcagattgattttgaa
ataagtgaggcataa
DBGET
integrated database retrieval system
