KEGG   Thermococcus paralvinellae: TES1_1910Help
Entry
TES1_1910         CDS       T03005                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ths  Thermococcus paralvinellae
Pathway
ths03030  DNA replication
ths03410  Base excision repair
ths03420  Nucleotide excision repair
ths03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ths00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TES1_1910
   03410 Base excision repair
    TES1_1910
   03420 Nucleotide excision repair
    TES1_1910
   03430 Mismatch repair
    TES1_1910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ths03032]
    TES1_1910
   03400 DNA repair and recombination proteins [BR:ths03400]
    TES1_1910
Enzymes [BR:ths01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TES1_1910
    6.5.1.6  DNA ligase (ATP or NAD+)
     TES1_1910
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TES1_1910
DNA replication proteins [BR:ths03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    TES1_1910
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     TES1_1910
DNA repair and recombination proteins [BR:ths03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TES1_1910
   NER (nucleotide excision repair)
    Other NER factors
     TES1_1910
   MMR (mismatch exicision repair)
    Other MMR factors
     TES1_1910
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Peptidase_S7
Motif
Other DBs
NCBI-ProteinID: AHF81285
UniProt: W0I9Y1
LinkDB All DBs
Position
complement(1830178..1831863)
Genome map
AA seq 561 aa AA seqDB search
MLYKELAELYRRLEKTTLKTLKTRFVADFLKKVEDEELLEIVPYLILGKVFPDWDERELG
VGEKLLIKAVAMATGINAEWIENSVKDTGDLGESVALALQKRKQKSFFGQPLTIKRVYKT
LVKVAETTGEGSQDRKLKYLANLFMDAEPIEGKYLARTILGTMRTGVAEGLLRDAIAEAF
RVKPELVERAYMLTSDFGFVTKIARLEGNEGLSKVTIQIGKPIKPMLAQMAASVREALIE
MGGEAEFEIKYDGARVQVHKDGDKVIIYSRRLENVTKSIPEVVERIRKSIKPEKAIVEGE
LVAVGEGGRPRPFQYVLRRFRRKYNIQEMIEKIPLELNLFDVLYVDGESLIDTPFIERRK
KLESIVEANQWIKVAENLITKSPEEAEEFYHKALDMGHEGLMAKRLDAVYEPGNRGKKWL
KIKPTMENLDLVIIGAEWGEGRRAHVLSSFLLGAYDPGTGTFVPVGKVGSGFTDEDLIEF
TKMLKPLIKKEKGKFVEIEPKVVIEVTYQEIQKSPKYESGFALRFPRYVALRDDKSPEDA
DTLERIAQLYELQERMKAGKR
NT seq 1686 nt NT seq  +upstreamnt  +downstreamnt
atgctgtacaaagagttggccgagctatatagaagactggaaaaaacaacactcaaaact
ttaaaaacaaggtttgtcgctgattttctcaagaaagttgaagatgaggagctcttagag
attgtgccctatctcattctaggaaaggtttttccagattgggacgaaagagaattaggt
gttggtgaaaagcttcttattaaagcagtcgcaatggcaaccggcattaatgcggagtgg
atagagaattcagtaaaagacactggtgatttgggtgagagcgttgcgttagcccttcaa
aaaagaaaacagaagagcttttttggacagcctttgacaataaagagagtttacaaaact
cttgtaaaagttgcagaaactacaggggaaggaagccaagataggaagcttaaatatctt
gcaaacctcttcatggatgctgaaccgattgaaggaaagtatttggcaaggacaatcctc
ggaacaatgagaacaggtgttgcagaaggacttttgagggatgcaatagccgaagcattt
agagtgaagccagagcttgttgagagagcttacatgctaacaagcgactttgggtttgtt
acaaaaatagccaggcttgagggaaatgaaggattatccaaggtcacaatccagattgga
aagccaataaagccgatgcttgcccagatggctgctagtgttagagaagctttaatcgag
atgggaggcgaagcagagtttgaaattaaatatgacggcgcgagagttcaggtccacaaa
gatggagataaagtgattatctattccagaagactggagaacgttacaaagtcgattcca
gaagtcgttgagaggataaggaagagcataaaaccagaaaaagccatagttgaaggagaa
cttgtagcagttggagagggaggaaggccaagaccgttccagtacgtcttgagaagattc
aggagaaaatacaacatccaagagatgattgagaaaataccgctggagcttaacttgttc
gacgttctttatgttgatggagagagcttaattgatactccttttatcgagcgccgcaag
aaattggagagcatagttgaagctaatcagtggattaaagttgcagagaacttgataacc
aaaagcccagaggaagctgaggaattttatcataaagccctcgacatgggacatgaaggc
ttgatggctaagcgtttagatgctgtttacgagccaggtaacagaggtaaaaagtggctc
aagatcaaaccaaccatggaaaaccttgatttagtaatcattggagcagaatggggagaa
ggaagaagagcacatgtcttaagctctttcctacttggtgcttacgaccctggcactggg
actttcgtcccagttggaaaagtgggtagcggatttacagatgaagacttaattgagttc
acaaaaatgcttaagcctctcataaagaaagagaaaggaaaattcgtggaaatagagccc
aaagtagtaattgaagttacatatcaagagattcaaaagagcccaaagtacgagagcggc
tttgcactgagatttccgagatatgttgccttgagagatgataaaagcccagaagatgct
gacactttagaaaggattgcacagctatatgagttacaagagagaatgaaagctggaaag
cgttag

DBGET integrated database retrieval system