Thermodesulfatator indicus: Thein_1402
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Entry
Thein_1402 CDS
T01546
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
tid
Thermodesulfatator indicus
Pathway
tid02020
Two-component system
tid02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tid00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Thein_1402
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Thein_1402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tid03021
]
Thein_1402
Transcription machinery [BR:
tid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Thein_1402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_6
HTH_21
Pox_E2-like
Y1_Tnp
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AEH45268
UniProt:
F8A9N7
LinkDB
All DBs
Position
1471984..1473426
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AA seq
480 aa
AA seq
DB search
MALELRQQVKLTQQLILTPQLQQAIKLLQLNRLELEQVIRQEIEQNPVLEQVELETKTIS
LEDISSEVKVDGEVTLASESPLGAEAVKEFDWEAYFQDTGSSYPSFAFEEKEAQDYERRL
SKPENLVSHLLWQLYLSDFTEKEREIGEYIIGNLDERGYLSLEISEIAGDLGVSQEAVLS
VLKKIQFFDPVGVASRDLRECLLVQLEHLGLTGTLAEKIVRDHLKLLENNNLSQLAKILG
VTVDDVEAAIEIIRNLEPRPARNYADTEPQYIEPDVEVFKEGDEWIVRLVDEDYSRLKIS
PYYRKLLQDPTTPLEVKQYIQKKLKAATWFIKSIEQRNRTLLKVSESIMRFQRDFLEKGV
VGLKPLTLKEVALDVDLHESTVSRVTTGKYIDTPHGLFELKYFFSSGYKSASGEEVASET
VKQYIREIIAQEDPKRPYSDQKISDILRQKYDIKIARRTVAKYRDQMGILPASRRKNKIK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgttagaacttagacaacaagtaaaactaactcaacaattaatattgactccacaa
ttgcagcaggccataaagctgctgcaattgaaccgccttgaactcgaacaggtcattcgt
caggaaatagaacaaaatcccgttttagaacaagtagaactggaaacaaaaactatatcc
ctagaagacatttcctctgaagtaaaagttgatggtgaggtaaccttagcctcggaaagc
ccccttggagcagaagcagtcaaggagtttgactgggaagcttatttccaagatacaggt
agctcttatcccagttttgcctttgaagaaaaagaagcccaggactatgaaaggcggctt
tctaagccagaaaatctggtttctcacctgctttggcagctctatctttcagactttacc
gaaaaagaacgagaaatcggagaatatattatcggtaacctagatgaaagaggctatctt
tctctagagatctccgagatagcgggtgatttaggtgtttctcaagaagctgttcttagc
gtcttaaagaagattcaattttttgatcccgtaggtgtagcttcccgagatttaagagaa
tgccttttggttcaattagaacatcttggtcttacaggtactcttgcagaaaaaatagtc
agagatcaccttaaactccttgaaaataataatttatctcagctggccaaaattttaggt
gtgactgttgatgatgtagaagcagcgatagagataattcgtaatcttgaaccacgtcca
gcgcggaactatgccgataccgaaccgcagtacatagaacctgacgtagaagtattcaaa
gagggtgatgagtggattgtgcggctggttgacgaagattacagccgtttaaaaataagt
ccttattatcgtaaacttcttcaagatcctactactcctttagaggttaagcagtatatt
caaaagaagctcaaagctgctacctggtttatcaaaagcatagaacagcgcaatagaact
ctgctcaaggtttcagaaagtattatgcgctttcagcgggattttttagaaaagggtgtg
gtaggcctaaaaccattaactttaaaagaagtggccctcgatgtggatctgcatgagtcc
actgtcagccgggtgactactggtaagtatattgatactcctcacgggctttttgagctt
aaatactttttttcctctggttataaaagcgcctctggagaggaagtagcttctgagaca
gtaaaacaatatataagagaaattattgcccaggaggatcctaaaagaccttacagtgat
cagaaaatttcagatattttaaggcagaagtacgacataaagattgctaggcgaacagtg
gccaagtatcgcgatcagatgggtatacttcctgccagcaggcgtaaaaacaaaataaag
taa
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