Thioploca ingrica: THII_1300
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Entry
THII_1300 CDS
T03616
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tig
Thioploca ingrica
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tig03016
]
THII_1300
Enzymes [BR:
tig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
THII_1300
Transfer RNA biogenesis [BR:
tig03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
THII_1300
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF1908
Motif
Other DBs
NCBI-ProteinID:
BAP55597
UniProt:
A0A090AJA6
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All DBs
Position
1547228..1549279
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AA seq
683 aa
AA seq
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MTEFEGHIWVAQDNDEVNFICTTKRVKNKIQAVNEKGRELRIAADKLLWQYPRQASGLED
WQTTCAQIQTTVANLQRDIDMALLWESAVELQLKAIQELAELYFGQTVTIEHLTALWRSI
AEDRLYFKRRGQDWEARSAEQITELKTQRTREQIRAQSQALAKEWLQALARSPLPAFPHL
SLSSDNDDEASENFQVLNLQPELLPFVERLESWLRGDTDKDAEELVSTIAITAKLNPREF
VFETLQKTGRLPLDADRDVMVAGLKPEFSAVVNEAAQMVPPWQPNPLGSITPLLFSIDDE
ETREVDDALAIEREGPLWKVTIAIADPASVVHCGDTLDREAMRRGTTVYLPTQTVLMLPE
RISCDIASLTAEQIRSSLVVRAWLDDQGEIIKSDINREGIKVLKRLHYSEADRLLQQGED
ETAQQLRNLLTIAKQLQSQRLAQGALTLQRSEYKVSVVQGQITVTIIDKDSPSRLLVAEM
MILANHIAARYAQRHQVPVIYRCQDAPLEPINESMLADPLSFHKIRKLLGRSSLSLQPCG
HTGLGLSLYTQLTSPLRRFADLVIQRQLMAHLVGEALPYDQEELFKVLETAERTAKESRL
IEGEAKKRWLMQYLKQDWGERAIEVLVISAVKNGYKVEMQPWAVEAFLSTNRTLEMGQTV
MAVPEKIRVKAATARLKLVKSEE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaatttgaaggccatatttgggtagctcaagataatgatgaggttaatttcatt
tgtaccaccaaacgagtaaaaaataaaattcaagcggttaatgaaaagggacgtgaatta
cgaattgcggcagataagttactgtggcaatatcctcgtcaagccagtggcttagaagat
tggcaaactacttgtgctcagattcaaacgaccgtagccaatttgcagcgtgatattgat
atggcgttgttgtgggaaagtgcggttgaattacagttaaaggccattcaggaattagct
gaattgtactttggccaaacggttactatagaacatttaacggctttatggcgaagtatt
gccgaagatcgcttatatttcaagcggcgtgggcaagattgggaagcacggtcagccgaa
caaattaccgaattaaaaacccaaagaacccgtgaacaaatccgcgctcaatcacaagcc
ttagctaaagaatggttacaagcactcgctcgctcaccgctaccggcctttccgcatttg
tcattgtctagtgataatgacgatgaagccagcgaaaattttcaagtacttaatttacaa
ccggaattgctaccttttgtggaacgattagaatcctggttacgtggtgataccgataaa
gatgccgaagaattagtcagtaccattgcgataacagcgaaacttaatccacgggaattc
gtttttgagacgttacaaaaaaccggccgactacccctagatgctgatcgtgatgttatg
gtcgcgggcttaaaaccagaattttctgctgtcgtcaatgaagcagcacaaatggtaccc
ccttggcaacccaacccgcttggctctatcacaccattactgtttagtattgatgatgaa
gaaactcgggaagttgatgacgccttagcaatcgaacgagaaggaccgctttggaaagtc
accatagcgatagctgacccagcgagtgtcgttcattgtggtgataccttagaccgagaa
gcaatgcggcgaggcaccactgtttatttaccgactcaaacggtgttgatgctgcccgaa
cgaatttcatgtgatattgctagtttaaccgccgagcaaatccgttcttctctggtcgta
cgcgcttggctagatgatcaaggggaaattatcaaaagtgatattaatcgagaaggcatt
aaagtacttaagcggttgcattacagcgaggcagaccggttactccaacaaggcgaagat
gaaactgctcaacaattgcgcaatttattaaccattgcgaagcaattgcaatcacagcgg
ctagcccaaggcgcgttgactttacaacgttcagaatataaagtgagtgtggtgcagggt
cagattactgtgacgataatcgataaagattctcctagccgtctgttagtggccgaaatg
atgattttagctaatcatattgctgctcgctatgctcaacgtcatcaagttccagtcatt
tatcgctgtcaagatgctccgcttgaaccgattaacgaatccatgctggccgatccgctc
agctttcacaagattcgcaaattattaggtcgatcttcgctatcactacaaccctgtgga
catactggtttaggattatctttatatacccaactgacttcgcctttacgccgctttgcg
gatctcgttattcagcggcagttaatggctcacttggtaggagaagcgttaccttatgat
caagaggaattatttaaagtactagaaacagcggaacgaaccgccaaagaatcgcgcctg
attgaaggggaagccaaaaaacgttggttaatgcaatatttaaagcaagattggggtgaa
cgagccatcgaagttctcgttatcagtgcggtcaaaaacggttataaagttgaaatgcaa
ccgtgggcagtggaagcttttttgagtaccaatagaaccttagaaatggggcaaaccgtc
atggccgtaccagaaaaaattcgcgtcaaagcagcaaccgcacgcttaaaattagtcaag
agtgaggaataa
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