Tuwongella immobilis: GMBLW1_20040
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Entry
GMBLW1_20040 CDS
T06428
Name
(GenBank) polynucleotide phosphorylase : Polyribonucleotide nucleotidyltransferase OS=uncultured planctomycete GN=pnp PE=3 SV=1: RNase_PH: RNase_PH_C: PNPase: RNase_PH: RNase_PH_C: KH_1: S1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tim
Tuwongella immobilis
Pathway
tim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMBLW1_20040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tim03019
]
GMBLW1_20040
03016 Transfer RNA biogenesis [BR:
tim03016
]
GMBLW1_20040
Enzymes [BR:
tim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GMBLW1_20040
Messenger RNA biogenesis [BR:
tim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GMBLW1_20040
Transfer RNA biogenesis [BR:
tim03016
]
Prokaryotic type
tRNA degradation factors
GMBLW1_20040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
VTR99955
UniProt:
A0A6C2YKJ7
LinkDB
All DBs
Position
1:1736208..1738442
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AA seq
744 aa
AA seq
DB search
MPVTRVECQLGEHTLSLETGKLAKQANGAVLVRSGDTVTLVTVVQGAADANRGFFPLVVD
YREKTYAAGKFPGGYIKRESRPSTKEILTSRLIDRPIRPLFPLNYFNEVQIMASVLAADR
DHDPDVLSMIGSSAALHISPIPFLKPTGSIRVGRVDGQFVLLPTAEQMEQSDLDLIVSGT
RDAVTMIEGFARELPEDVMADAIAFAHENILKVIDLIEQFREAAGLPVKELPPAPEPNPL
LAELLAKYRDEFKARKLTPGKLERAAKISELKSQVMQEYLPAGAEPRYPESVVKQAFEQF
EERIFREIVLSGGRIDGRQPKEIRPISCEVGVLPRVHGSALFTRGETQALVISTLGTIAD
EQRVEGLFEEISKKFMLDYNFPPFSVGECRPIRGPGRREIGHGALAERSLNAVTPAPNKF
PYTIRLVSEILESNGSSSMATVCGGTLALMDAGVPIKDPVAGISVGLVKEGEQFTLLTDI
QGDEDHYGDMDFKVAGTQRGITGIQLDLKIDGINNTIIRATLDQAREARREILRTMLMSL
RQPRQNISEFAPRLLQVKINPEKIGLLIGPGGKNIKGIQEATGAKIDIDDDGTVSIAHSD
AAGAEEAKRRVEAITEEVKVGKTYEGRVTSIKEFGAFVEILPGRDGLCHISELDDKFVGR
VEDIVKVGDKMTVKVIAIDDQDRVKLSRKALMKDANGESGSSAPPSGGRPPREDRGDRGD
RGERNDRGDRGDRGRDRGDRGPRR
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
gtgccggtgactcgtgtcgaatgtcagctcggtgagcataccttaagtctggaaaccggc
aagctcgccaagcaagcgaacggggccgttttggtccgttcgggtgataccgtcaccctc
gtgacggtggtgcagggggctgcggatgcgaatcgtgggttcttccccctggttgtggat
taccgagaaaaaacctacgctgccggcaaattccccggtgggtacatcaagcgggaaagc
cgcccctcgaccaaagaaattttgacgtcccgattgattgaccgccccatccgcccgctc
ttcccgctcaactatttcaacgaagttcagattatggccagtgtgctggccgccgaccgg
gatcatgaccccgacgttctgtcgatgattggctcgtctgctgccctgcatatctcgcca
attccgttcctgaaaccaaccggttccattcgcgttggccgtgtcgatggacaattcgtc
ctcctgccgaccgccgaacaaatggaacaaagcgatctcgatttgatcgtttccggcacc
cgtgatgccgtcacgatgatcgaaggtttcgcccgcgaactgcccgaagatgtcatggcc
gatgcgattgcattcgctcatgagaatatcctcaaggtgatcgacctgattgagcaattc
cgcgaagcggccggtctcccggtcaaggaattgcccccggctcccgaaccgaaccccttg
ctggcagaattgttagcgaaataccgcgacgaattcaaagcccgcaaactgacccccggc
aaactcgagcgcgctgccaaaatcagcgaactcaagtcgcaagtcatgcaagaatacttg
ccggctggcgcggaaccgaggtatccggagtcggtcgtcaagcaagcattcgagcaattc
gaagagcgaatcttccgagaaatcgttctgtcgggtggccgaatcgatggccgtcagccc
aaggaaattcgcccgatttcgtgcgaagtgggtgtgctgcctcgcgttcacggctcggcg
ttgttcacccgtggtgaaacgcaagccctggtgatctcgacacttgggacgattgccgac
gaacagcgcgtcgaaggtctgttcgaagaaattagcaagaagttcatgctggactacaac
ttcccgccgttctcggtcggggagtgccgccccattcgtggccccggtcgccgcgaaatc
ggtcacggtgccctggcagaacgctcgctgaacgccgtcaccccggcccccaataagttc
ccgtataccattcgcttggtgtcggaaattctggaatcgaatggttcgtccagtatggcg
acggtctgcggcggaaccctcgcgttgatggacgctggggtgccgatcaaagaccccgtt
gccgggatttcggtcgggctggtgaaggaaggcgagcaattcacgctgctgaccgacatt
caaggtgatgaagaccattacggcgatatggacttcaaggtggccggtacccaacgcggg
atcaccggcattcagctcgacctgaagatcgacgggatcaataatacgatcattcgtgcg
actttggatcaagcccgcgaagcccgtcgagaaattctgcgaacgatgctgatgtcgctg
cgtcaaccgcggcagaatatcagcgaattcgcaccgcgactgctccaagtgaagatcaat
ccggaaaagattggtttgctcattggaccgggtggcaagaatatcaagggcatccaagaa
gccactggtgccaagatcgatatcgatgatgacggcacggtctcgatcgctcactcggat
gctgcgggggctgaagaagccaagcgccgcgtggaagcgattaccgaagaagtcaaggtc
ggcaagacatacgaaggtcgcgtcacgtccatcaaggaatttggcgcgttcgtcgaaatt
ctgccgggccgcgatgggctgtgccatatctccgaactcgacgataagttcgtcggacga
gtggaagatattgtcaaggttggcgataagatgaccgtgaaggtcattgccattgacgat
caagaccgcgtgaaattgtcgcgcaaggcgttgatgaaggatgccaacggcgaatccggc
agcagtgctccgccttcgggtggtcggccgccgcgtgaagaccgtggcgaccgcggcgat
cgtggcgaacgaaatgatcgcggggaccgtggcgatcgtggccgggatcgtggcgatcgt
ggcccccgtcgttaa
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