KEGG   Thermoanaerobacter italicus: Thit_1868Help
Entry
Thit_1868         CDS       T01178                                 

Definition
(GenBank) DNA polymerase LigD, ligase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tit  Thermoanaerobacter italicus
Pathway
tit03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Thit_1868
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tit03400]
    Thit_1868
Enzymes [BR:tit01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Thit_1868
DNA repair and recombination proteins [BR:tit03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Thit_1868
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ADD03110
UniProt: D3T4F8
LinkDB All DBs
Position
1913498..1914421
Genome map
AA seq 307 aa AA seqDB search
MTMIEEKISPMLAFSSDPFDNPEWIYEIKWDGSRTIAFLSNKTRLQDRRLVDITHQFPDL
ALLHKQIKAKEAILDGELVVLKNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDIL
YLNGKSLVELPLIERKDILRKTVKESEVIKISDFIFEHGKRLFEETGKRGLEGIVAKKVD
SKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
LKAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRAPSFIQFEYNVK
PEECRFE
NT seq 924 nt NT seq  +upstreamnt  +downstreamnt
atgactatgatagaagaaaaaatatcacctatgctggcattcagtagtgacccttttgat
aatcctgaatggatatatgaaatcaaatgggatggttcaagaactatcgcttttctttca
aataaaacaaggcttcaagatagaaggcttgttgatataacccaccagtttccggactta
gcattgcttcataagcaaataaaagcaaaagaagcaatactggacggtgaactggtagtc
ttaaaaaacggcaagcctagttacaaaagcattatgtcgagaaagcatcaacaaaattta
gtaaaaataaatcttttaagcaagataatgcccgtaattttcataacatgggatatatta
tacttaaacggcaaatctcttgtagaattgccacttatagagagaaaagatatacttaga
aaaacagttaaagaaagcgaggtcataaaaatatctgattttatttttgaacatggcaaa
aggctttttgaagagacaggcaaaaggggacttgaaggaattgtcgctaaaaaagttgat
tcaaaatatttaatagggaaaaggagtaaactgtggcttaagtcaaaacattttattgta
ataaatgcagttattatagggtacagaactgataaaacagctcttatattgggactttac
gatgaggaaaataatttaataaacataggaagttgtgaatcaggcctatcccagaaggaa
ttaaaagcattttatgaagttgccaaggagataaaagctccagataattattataacttt
aaagaaaaaaatgtgcaatggttaaagcctttgctaacatgtaaagtgagatttatggaa
tggtctgaaaacatgaaaatgagggcaccttcttttattcaatttgagtataatgtaaag
ccagaagagtgcaggtttgagtaa

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