Thermincola potens: TherJR_1553
Entry
TherJR_1553 CDS
T01226
Definition
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tjr
Thermincola potens
Pathway
tjr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TherJR_1553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tjr03400
]
TherJR_1553
Enzymes [BR:
tjr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TherJR_1553
DNA repair and recombination proteins [BR:
tjr03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TherJR_1553
SSDB
Other DBs
NCBI-ProteinID:
ADG82406
UniProt:
D5XFI5
LinkDB
Position
complement(1618984..1619889)
AA seq
301 aa
MTCQIVQIEEREVRLTNLEKEMWPDGYTKADLIKYYVDMSPYILPYIKNRLFIMSRYPDG
ITGKMFYQKDAPEYTPEWVRTYPLVSERENKVVNYIVCDDLPTLVWLANQACIELHIWMA
QKERLDYPDIVVFDLDPFPPATFKDTLDVAMLVKEALDRFGLQGYPKTSGSTGLHIFLPV
RPEFTYAQVREGVRFLFEHIHAVYPEKTTLERSIDKRAGKVYLDYGQNTRGHTMTFHYSL
RPHPGAPVSTPLTWDEVRAGDIEPEDFNIKTIFPRIAKVGDLYRPLLHREQSFAGLLTLV
T
NT seq
906 nt
+upstream
nt +downstream
nt
ttgacctgtcagatcgtacaaatagaagagagagaagtgcgcttaacaaatttggaaaag
gaaatgtggcccgatggttatacaaaagctgatttgataaagtattatgtagatatgtcc
ccttacattcttccttatatcaaaaacaggctctttattatgagccgttaccctgacgga
atcaccggaaaaatgttttaccaaaaagacgctccggaatacacgcccgaatgggtgcga
acctatccgctggtttcggaacgtgagaataaagtagtcaattacattgtttgtgatgac
ttgcctaccttagtatggcttgcgaaccaggcctgtatagaactgcatatttggatggct
cagaaggaaaggctggactacccggacattgtggtgtttgatttagatccttttcccccg
gctacttttaaggatacattggatgtggctatgttggttaaagaagccctggaccggttt
ggtctccaagggtatccgaaaacatcaggttctacgggactgcatatttttcttcctgtg
cggcctgaatttacttatgcccaggtaagagaaggggtcaggtttttatttgaacacata
catgctgtttacccggaaaaaacaacgctcgaacggtctatagacaaacgggcaggtaaa
gtatatctggattacggtcagaataccaggggccacactatgacctttcattacagcctg
cgaccgcaccccggagcgccggtttccactccgttgacgtgggatgaggtccgggccggc
gatattgaaccagaagattttaacatcaaaactatttttccacggattgcaaaagtgggt
gatttgtatcgtcctttactgcaccgggaacagtctttcgcagggcttttgacattagtc
acgtaa
DBGET
integrated database retrieval system
