Tetragenococcus koreensis: C7K43_05285
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Entry
C7K43_05285 CDS
T05710
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tkr
Tetragenococcus koreensis
Pathway
tkr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tkr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7K43_05285 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tkr03019
]
C7K43_05285 (rnr)
03016 Transfer RNA biogenesis [BR:
tkr03016
]
C7K43_05285 (rnr)
Enzymes [BR:
tkr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C7K43_05285 (rnr)
Messenger RNA biogenesis [BR:
tkr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7K43_05285 (rnr)
Transfer RNA biogenesis [BR:
tkr03016
]
Prokaryotic type
tRNA degradation factors
C7K43_05285 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
GAGA_bind
Motif
Other DBs
NCBI-ProteinID:
AYW45404
UniProt:
A0A3G5F502
LinkDB
All DBs
Position
complement(1116276..1118603)
Genome browser
AA seq
775 aa
AA seq
DB search
MKETIKTKVLHFMENSSKKSFSMEEIAENLGLAKSDDFKALVQTIATMEREELVVFNKKG
KVKLPTKQVLLEGTFRANERGFGFVTIDPEEDDVYIGKEHTGYAMDGDLVAVDIIKPADP
ADGLGAEGQIVEIRQRNTTQVVGEFQLFSEEEIADTDLYGVIIPKEKKLAGFKVLISAVG
LRPVDGNIVIAEITHYPEKGYADSLEGMVKNVIGHKDEPGMDILSVLAAHHVPTEFSEEV
LEQANQVPDSIHPDDYPDRKNRQDQMIVTIDGEEAKDLDDAVSVKKLDNGHFFLAVHIAD
VSYYVTENSPLDKEALERGTSVYLTDRVVPMLPQRLSNGICSLNPKVPRLAMSCEMEVDA
QGNVVSSDIFPSVIQTNERMTYTAINEILEDENPKTMAQYQDLVPMFQAMKELHECLEAM
RTKRGALTFEDNEAQVVVDESGHPLDIVLRQRGIGERIIESFMLCANETIAKHYQQLNLP
FIYRIHEEPKEEKIQQFFDFAATLGILVKSKKGTISPKDLQEVVERAAEKPESMVINTML
LRSMQQARYSEENVGHYGLAAEYYTHFTSPIRRYPDLLVHRLIRSYSKDTSKANQSKWAK
EIPDIAQHSSDMERRAVDCERDVDSMKKAEYMQDHIDEEFDGVISSVVKFGFFVELPNTI
EGLIHVSELQNDYFQFVESQLALVGERTNQTFKIGQQVKVRVTKADPETREVDFELVDAQ
EVAPPQQKKQQNRKQRRKNQEDIPAKKKDKNGKKGKNKKKQPFYKGAPKGTKKKR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagacaataaaaacgaaagtcttacactttatggaaaatagttccaaaaaaagt
ttctcgatggaagaaatcgcagaaaatttgggacttgcaaaaagtgacgattttaaagca
ttagtacaaactatagcaacaatggaaagagaagaactggtcgttttcaataaaaaaggg
aaagtaaaacttccgactaagcaagtgctacttgaaggaacttttcgtgcaaatgagcga
ggatttggttttgtgacgattgatccggaagaagacgacgtatatatcggaaaagaacat
acaggttacgcaatggacggtgatttggtagcagttgatatcataaaaccggcagatcct
gctgatggattgggagctgaaggtcagattgtagaaatacggcaaagaaataccacgcaa
gttgttggcgaatttcagctattttccgaagaagaaattgcggatacagatttgtatggc
gtgattattcctaaagaaaaaaaattagctggatttaaagtactgatctcggccgtaggg
ctccgtccagtagatggaaacatcgtgattgcagaaattactcattatcctgaaaaaggc
tacgctgatagcttagaagggatggtaaaaaatgttattgggcataaagatgaacctgga
atggatattttatcagttttagcagcccatcatgttccaactgaattttctgaagaagta
cttgaacaagccaatcaagtccctgattcgattcatcctgacgattatcccgatcgaaaa
aatcggcaagatcagatgattgtaacgattgatggtgaagaagctaaggatttagatgat
gcagtctcagtaaaaaaactagacaacggccatttctttttggctgtgcatattgctgac
gtttcttattatgtaacagaaaatagtccattagataaagaagctttggaacgtggaacg
agtgtttacctaactgaccgcgttgttcctatgttaccgcaacgcttgtctaatgggatc
tgttcgttaaatcctaaagtacctcgtctagcgatgagttgtgaaatggaagttgatgct
cagggaaatgtagtttcttctgatatttttccaagtgtcatccaaacgaatgaacgaatg
acctatactgcgataaatgaaattttagaagatgaaaatccgaaaacaatggcccaatac
caagatttagtgccaatgtttcaagcaatgaaagaactgcatgagtgtttagaagctatg
cgtactaaacgcggggctctaacttttgaagacaatgaagcccaagtagttgtagatgaa
agtggtcatccactagatattgttttaagacaaagaggaattggtgaacggattattgaa
tcatttatgctttgtgctaatgaaacaatcgcaaagcactatcagcaactaaatttacca
tttatttatcggatccacgaagaacctaaagaagaaaaaatacaacaattctttgatttt
gcggcaacattaggtattcttgttaagagtaaaaaaggcacaattagccctaaagaccta
caagaagtagtagaaagggcagcagaaaaaccagaaagtatggttattaacacaatgctg
ctaagaagcatgcaacaggcgcgttattcagaggaaaatgtaggacattacggattagca
gcagaatattatactcattttacttctccgatccgtcgttatcctgatttattggtccat
cgtttaattcgttcctatagtaaagatacatcaaaagccaaccaatcgaagtgggctaaa
gagattcctgatattgcacaacatagttctgacatggaacgacgtgcggttgactgtgaa
cgcgatgttgattcaatgaaaaaagcagaatatatgcaagatcatattgatgaagaattt
gacggtgtgatcagttctgtagttaaatttggtttttttgttgaattgccaaatacgatt
gaaggtctaattcacgtgagtgagttacaaaatgattattttcaatttgttgaaagccaa
cttgcactcgttggcgaacgaacgaatcaaacatttaagatcggccaacaggtaaaagta
cgtgtgaccaaagcagatcctgaaacacgcgaagtagattttgaattagtagatgcacaa
gaagttgcaccgcctcaacaaaaaaagcaacaaaaccgtaagcaacggagaaagaatcag
gaagacataccggcgaaaaaaaaggataaaaatggaaaaaaggggaaaaataaaaagaag
cagcctttttataaaggcgccccaaaaggtacaaagaaaaaaagatag
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