Thioflavicoccus mobilis: Thimo_1922
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Entry
Thimo_1922 CDS
T02397
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tmb
Thioflavicoccus mobilis
Pathway
tmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thimo_1922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmb03019
]
Thimo_1922
Enzymes [BR:
tmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thimo_1922
Messenger RNA biogenesis [BR:
tmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thimo_1922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UTP25
ResIII
AAA_19
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AGA90687
UniProt:
L0GXY6
LinkDB
All DBs
Position
2122752..2124005
Genome browser
AA seq
417 aa
AA seq
DB search
MSFDSLCLTDELRRAIAAQGYRSPTPIQAQAIPAILDGRDVLAGAQTGTGKTAAFTLPML
QRLGERQTGHQRPRALVLTPTRELAAQVGESIVTYGRYLPLRSAIIFGGVGIQPQIAQLR
RGVDIVVATPGRLLDHVGQRTLDLSGIEILVLDEADRMLDMGFIHDIRRVLRLLPTNRQS
LLFSATYSNEIEQLANGLLRDPVTIAVARRNTAAEQVSQLVHPVAKERKRELLSHLIHSQ
GWDQVLVFTRTKHGANRLTDQLVRDGIAAAAIHGNKSQSARTNALAGFKRGAVRALVATD
IAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAGSAGAAFSLVCHEEQKLLVGIERL
LKRAIPSASVAGFEPPVVPAAARPAPAAALPQGRRPRRPPHAGAGRPQQYRNNRPTN
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctctgtgtctcacggacgaactgcgtcgcgcgatcgcggcgcagggt
tatcgttcccccacgccgattcaggcccaggccatcccagccatcctcgacggacgagat
gtactggccggcgcccagaccggcacgggcaagacggccgccttcaccctgccgatgctg
caacgactcggcgaacgccagaccggccaccagcgcccgcgcgccctggtcctgacgccg
acccgtgagctggccgctcaggtcggtgagagcattgtgacctatggtcggtacctgccg
ctgcgctcggcgatcatcttcggcggcgtcggcatccagccacagatcgcgcagttgcga
cgcggcgtcgacatcgtcgtcgcgacgccgggccggctcctcgaccacgtcggtcagcgc
acgctggatctatccggtatcgagatcctggtcctcgacgaggcggaccggatgctcgac
atgggcttcatccacgacatccgccgagtcctcagattgctgccgaccaatcgccagagc
ctcctcttctccgccacctattcgaacgagatcgaacagctcgccaacggcctgctgcgc
gatccggtgacgatcgccgtggctcgccgcaacaccgcggccgagcaggtttcgcagctg
gtccatcccgtcgccaaagaacgcaagcgcgaactgctctcgcacctgattcacagtcag
ggctgggaccaagtgctcgtcttcacccgcaccaagcacggcgccaatcgccttaccgat
cagttggtgcgcgacggcatcgcagccgctgcgatccacggcaacaagagccagagcgcc
cgtaccaacgccctcgcaggcttcaaacgcggcgcggtgcgggcactggtggcgaccgac
atcgccgctcgtggcctcgacatcgatcagttgccctatgtcgtcaactacgaactgccg
aacgtgccggaggactacgtccaccgcatcggccgcaccggccgcgccggtagcgccggg
gccgccttctcgctggtctgccacgaggagcagaagctgctggtcggcatcgaacgcctg
ctcaagcgggcgatcccatcggcctcggtggccggtttcgagccgccggtggtgccggcg
gcggcccgccccgctcccgcggccgccctgccgcaaggccgccggccgcgacgtcctccg
cacgctggcgcaggtcggccgcaacaatatcgcaataatcgcccaacgaactga
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