Thioflavicoccus mobilis: Thimo_2332
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Entry
Thimo_2332 CDS
T02397
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tmb
Thioflavicoccus mobilis
Pathway
tmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thimo_2332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmb03019
]
Thimo_2332
03016 Transfer RNA biogenesis [BR:
tmb03016
]
Thimo_2332
Enzymes [BR:
tmb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Thimo_2332
Messenger RNA biogenesis [BR:
tmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thimo_2332
Transfer RNA biogenesis [BR:
tmb03016
]
Prokaryotic type
tRNA degradation factors
Thimo_2332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AGA91072
UniProt:
L0GZ10
LinkDB
All DBs
Position
complement(2589411..2591675)
Genome browser
AA seq
754 aa
AA seq
DB search
MAKRNPDKKTPRDLDPHHQREAKRYAKPIPSREYIQQALKEAGVPLAFDDVASALALEDE
ADLSALERRLGAMVRDGQLVRNRRDAFCLVNKRDLIVGRVIGHPDGFGFVKPDDGGDDLY
LYPKEMRALFHNDRVVVRVTGRDRRGRLEGAVVEILERSTRTVVGRLYQESGVGFVKPDN
KRLHHYVVIPRDRLDGAQTGQIVVAEITDQPTKHTQPIGRILEVVGDHMAPGMETDIAIR
THDLPVDWPAEVEAEIAAFTTEVPEEDKVGRTDLRELPLVTIDGADARDFDDAVYCERKP
KGWKLLVCIADVSAYVAAGSALDAEALARGNSVYFPDRVIPMLPEVLSNGLCSLNPRVDR
LCMTCELYLNDAGKVTRSRFFTAVMRSHARLTYDEVAAMIVDADADLCARHAALLPHLHE
LYALYQVLHGARVERGAIDFDTTETKFQFNDQGRIEAVVPLVRNDAHRIIEECMLAANVA
TARLFERKRMPALYRIHEPPNEEKITDLREFLGQLGLRLPGRSKKPTTQDFAALLEEVKG
RPDRHLIQTVLLRSMQQAMYSSDNAGHFGLAYPAYTHFTSPIRRYPDLIVHRIIKHILAG
GTAADLEYSKPQLQGIGEQCSGTERRADEATRDADAWLKCEFMQDKLGEEFDGTITSVNS
FGLFVELDDIYIDGLVHITALDNDYYHFDPVGRRLTGERTGTVYRLGDRLRVKLAAVNLD
ERKIDFVLAPTGRSNSGKGKGESPGRRSRRRRKG
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaagcgaaatccagacaagaagactccgagggatttggatccccaccaccaacgc
gaagcgaagagatacgctaagccgatcccgagtcgggaatacatccagcaggcgttgaaa
gaggctggcgtgccgctcgccttcgacgatgtggcgagtgcgctcgccctggaggatgaa
gccgatctgtccgccctggagcgccgcctcggcgcgatggtccgcgacggtcagctggtg
cgcaaccgccgggacgcgttttgcctcgtcaacaagcgcgacctgatcgtcgggcgggtc
atcggtcaccctgacggcttcggcttcgtcaagccggacgatggcggcgacgatctgtat
ctctatccgaaggagatgcgcgcattgttccataacgaccgagtcgtcgtgcgcgtgacc
ggtcgtgatcgccgcgggcgcctcgaaggcgctgtcgtcgagatcctcgagcgcagcacg
cgcaccgtcgtcgggcggctgtaccaagagagcggcgtcggtttcgtcaagccggataac
aagcgcctgcatcactatgtcgtcatcccgcgggaccggctcgacggtgcccaaaccggg
cagatcgtcgtcgccgagatcaccgatcagccgaccaagcacacccagccgatcggtcgg
atcctcgaggtcgtcggcgatcatatggccccgggcatggaaacggatatcgccatccgc
acccacgacctaccggtcgactggccggccgaggtcgaggccgagatcgccgctttcacc
accgaggtgcccgaggaggacaaggtcgggcgcaccgacctgcgcgagctgccgttggtg
acaatcgacggcgccgacgcgcgcgacttcgacgatgccgtctactgcgagcgcaagccc
aaaggctggaagctgttggtctgtatcgccgatgtctcggcctatgtggccgcgggttcg
gcgctcgatgccgaggccttggcccgcggcaactcggtctacttcccggaccgcgtcatc
ccgatgctgccggaggtcctctccaacggcctgtgctcgctgaatccgcgggtcgaccgc
ctctgcatgacctgcgagctctatctgaacgatgccggcaaggtgacccgctcgcgcttc
ttcaccgccgtgatgcgttcgcatgcacgcctgacctacgacgaggtcgcggcgatgatc
gtcgacgccgacgcggatctttgcgcccgccatgctgccctcttgccgcacctgcacgag
ctctacgccctttaccaggtcctgcatggcgcgcgcgtcgagcgcggtgcgatcgacttc
gacacgaccgagaccaagttccagttcaacgatcagggtcggatcgaggcggtggtaccc
ctcgtgcgcaacgatgcacaccgtatcatcgaggaatgcatgctcgcggccaatgtcgcc
acggcgcgactcttcgagcgcaagcggatgccggccctctaccgcatccacgagccaccg
aacgaggagaagatcacggacctgcgcgagttcctcgggcagctcggtctgaggctgccg
gggcgcagcaagaagccgacgacgcaggacttcgccgccctgctcgaggaggtcaagggc
cggcccgaccgccacctgattcagaccgtcttgttgcgctccatgcagcaggcgatgtac
agctcggacaatgccggtcacttcggactggcctatccggcctacacccacttcacctcg
ccgatccgccgctatccggacctgatcgtgcaccggatcatcaagcacatcctcgccggg
ggcaccgcggccgacctcgagtactcgaagccgcagctccaggggatcggcgagcagtgc
tccggcaccgagcggcgcgccgatgaggcgacccgcgacgccgacgcctggctcaagtgc
gaattcatgcaggacaagctgggcgaggagttcgacggcaccatcaccagcgtcaactcg
ttcggtctgttcgtcgagctcgacgacatctacatcgacggcctcgtccacatcacggcc
ctcgacaacgactactatcacttcgatccggtcgggcggcgcctgaccggggaacgcacc
ggcaccgtctaccggctcggcgaccgcctgcgggtgaagcttgctgccgtcaatctcgac
gagcgcaagatcgacttcgtgctggcgccgaccgggcggagcaacagcggcaagggcaag
ggcgagtcgccgggccgccgctcgagacggcgccgcaagggctga
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