Phaeoacremonium minimum: UCRPA7_2301
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Entry
UCRPA7_2301 CDS
T03102
Name
(RefSeq) putative pab-dependent poly -specific ribonuclease subunit pan2 protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCRPA7_2301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmn03019
]
UCRPA7_2301
Enzymes [BR:
tmn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
UCRPA7_2301
Messenger RNA biogenesis [BR:
tmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
UCRPA7_2301
mRNA degradation factors
3'-5' decay
Pan complex
UCRPA7_2301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
CdaS_N
Motif
Other DBs
NCBI-GeneID:
19322536
NCBI-ProteinID:
XP_007913048
UniProt:
R8BS73
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MDADWDEVARVLLPPPGGHPHAIPTPVATLAFDTSQELLWAGNEYGRVTSFYGTDLQRYT
SFKAHPSSDGPVRQLLFNDKGVIALGAKGVHMASRKGPPIWHISHEDMKDLRCMSFTSKA
TSEILVAGLQDTMFVIDVNKGEVVKQVPTSDHYILMKKSRHICAATKDGYVNILDTTKLN
ILQKWRAHSSYINDMDVQQDFIVTCGASYKQQAATTYMLDPYVNVFDLKNMSVMSPIPFP
PLAAYVRMHPRMVTTGIVVSQGGQMHVVDLLNPNTSNVRQANVLSYVTMIEIAPSGEAIA
LADTECYMHLWGSPSKIHFAEFATPVEFPDSEEPQPQISWAADTPLNTIGMPYYRETLLS
AWPSNLISDVGAPPARYDPSYLAGLQSADFGLYGRNTRGLRRNQVEDTRSSDKSSNTMQA
PKFLSEKARESAKASGAMSDAKVEDIVDSLTTTELESLKPDVPGMYRNVEIKYSRFGVDD
FDFGDQCLLCELGYLSDMLQKAEGSTCQATNMFKCLTNHPQAGPLGLLEDDARRAPLATM
IQHLTRFLLDRMARDFNSMSPGNNAMEQVLATSALTSIRCMNCRSETTRPGSTYVNELLY
PANKNSRGGRATKITFSQVLKASVERETTNKGWCNRCNRYQSLATRKTIHSVPAVLTLNA
QVSSAEHRMLWATPGWLPEEIGIIVDQGQFFCYEGEDLKLHLQRGIHNIMVYSLVGLSVN
IECSPPQKPHLVAMVNVAHAEPTPPAESQWHLFNDFSVRGVSKQEALTFNTGWKTPSVLM
YQLKAANNQLDTEWRSKLDTSILSLDLKSNAGEKTYRVLDLATENPGPDTIIGIDTEFVA
VKQPEIEMNSEGERETIRPMIYALARVSAVRGMGEDEGLPFIDDYIEIKEPISDYLTLYS
GITHGDLDPRTTRHNLVSLKIAYKKLWILLNLGCKFLGHGLKQDFRVINIQVPKAQIIDT
INLFFLQSRLRKLSLAFLAWYLLKEDIQLETHDSIEDARTALKLYRKYLEFEDAGILEPM
LQDIYRAGRDTNYKPPRKDDMPVQRTDTPPIPIEGGPGPSTPARRAAAVPPTSFGNSAAF
TPGKGSPLR
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggactgggatgaggttgcgcgcgttctgctccccccgccgggcgggcacccc
catgccatccccacacccgtcgcgacattggccttcgataccagccaggagcttctatgg
gctggcaatgaatatggccgggtcacctccttctacggcaccgatctccagcgatacaca
tcattcaaagcacacccctcttccgatggcccagtgcgccagctgctcttcaatgataag
ggtgtcatcgcgctcggcgcgaagggtgttcatatggcctcgcggaaggggccgccaata
tggcacatcagccatgaggatatgaaggacctgcgatgcatgagcttcacctcgaaggct
acatccgagatcctcgttgccggcctacaagacaccatgttcgtgatcgatgtgaacaaa
ggcgaggtagtaaagcaggtccctacatcagaccactatatcctcatgaagaagagccga
cacatctgcgccgccacgaaagacggctacgtcaacatcctcgacaccaccaagctcaac
atcctgcagaagtggcgggcgcattcctcctacatcaacgacatggacgtgcagcaagac
ttcatcgtgacctgcggcgcctcgtataagcagcaggcggcaaccacgtacatgctcgac
ccctacgtcaacgtcttcgacctcaagaacatgagcgtcatgtcgcccatccccttcccg
cccctggcggcctacgtccgcatgcacccgcgcatggtcaccacgggcatcgtcgtgtcc
cagggcggccagatgcacgtcgtggacctgctgaaccccaacaccagcaacgtgcgccag
gctaacgtcctgtcgtacgtgacgatgattgagattgcgccctcgggcgaggccatcgcc
ctggctgacaccgagtgctacatgcatctctggggctcgccgtccaagatccactttgcc
gagtttgcgacgccggtcgagttcccggacagcgaggagccgcagccgcagatcagctgg
gctgcggacacgccgctgaacaccatcggcatgccgtattatagagagacactgctgtcc
gcctggccgagtaacctgatatcagatgtaggagcaccgcctgctcgatatgacccgagc
tatctcgccggtctgcagtcagccgactttgggctgtacgggaggaacactcgcggtctt
cgtcggaaccaggtcgaggatactcgcagctccgacaaatcatcaaataccatgcaagca
ccgaagttcttgagcgagaaggctcgagagtcagctaaagcgtctggcgcaatgtcagat
gcaaaggtagaagatatcgtcgactcgttgacgactacagaactagaaagcttgaagccc
gatgtccccgggatgtatcgaaatgtcgagatcaaatacagcagatttggcgtcgatgat
ttcgattttggcgatcagtgcctcctatgcgaactaggctatttgtcggacatgctgcag
aaggctgagggatctacttgtcaggctaccaacatgttcaagtgcctcaccaaccacccc
caagctggcccgcttggtctgctcgaggacgatgccagacgcgcgccgctggctacgatg
atacagcacctgacccggttcctgcttgacagaatggcgcgtgattttaatagcatgtcg
ccaggaaacaatgccatggagcaggttctggctacctctgcactaacgtcgattcgatgc
atgaattgcaggagtgagactacgaggcctgggtcaacatatgtgaacgagttgctctac
cctgcaaataagaattctcggggtggaagagctactaaaattacattctcccaagtgctg
aaggccagtgttgagcgagagactaccaacaagggctggtgcaaccgatgcaaccggtat
caatctctcgcaacgcgcaagaccattcacagcgtccccgcagtcttgacgctcaacgcg
caggtctcgtcggcggagcacaggatgctgtgggcaaccccaggatggctaccggaggaa
attgggatcatagtggatcaaggccagttcttctgctacgaaggggaagacctcaagctg
catctgcagcgaggcatccataacatcatggtgtattcgctcgttggcctatcggtcaac
atcgagtgctcgccgcctcagaagccgcatcttgtggctatggtcaacgtcgctcatgcg
gagccgaccccgccggcggagagccagtggcatctgtttaacgacttctccgttcgcgga
gtgtccaagcaggaagctctgactttcaacacgggctggaagacgccttcggtcttgatg
tatcagctcaaggcagcgaacaaccagctagacacggagtggaggagcaagttggacacg
tccatcttgtctctagacttgaagtccaacgcgggagagaagacgtaccgtgtcctggat
ttggccacagaaaaccctggccctgacactataattggcatcgataccgagttcgttgcc
gtcaaacagcctgagattgagatgaactcggagggcgagcgcgagactattcgcccaatg
atttacgcccttgcccgagtatctgcggtccgtggaatgggcgaggacgaaggactgcca
ttcatcgacgactacatcgagatcaaggagccgatatctgattacctgacgctgtattcg
ggtatcactcatggcgatcttgatccgcgtaccacaaggcacaatctcgtgtctttgaag
attgcttataagaagctctggattctgctcaaccttggctgcaaattccttggacatggt
ctgaaacaggatttccgcgtcatcaacatccaagtcccgaaagcacagatcatcgacaca
atcaacctcttcttcctgcagtctcggctgcggaagctctctctcgccttcctggcctgg
tatctgctcaaggaagacatccagctcgagacgcacgactcgatcgaggatgccaggacg
gcgctgaagctgtaccggaagtatctggagtttgaggacgcggggatcctggagcccatg
ctccaggatatctaccgtgccggcagggacacgaactacaagccgccgcggaaggatgac
atgcctgtgcagcggacggacacgccgccgataccgattgagggcgggcccggcccgtcg
acgccggcgagacgggcggctgcggtgcccccgacgtcgtttgggaatagtgcggcgttt
acgccggggaaggggtctccgttgagatag
DBGET
integrated database retrieval system
