Tistrella mobilis: TMO_0177
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Entry
TMO_0177 CDS
T02128
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
tmo
Tistrella mobilis
Pathway
tmo02020
Two-component system
tmo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tmo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TMO_0177
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TMO_0177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmo03021
]
TMO_0177
Transcription machinery [BR:
tmo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TMO_0177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_31
HTH_IclR
HTH_Crp_2
HTH_3
HTH_23
HTH_38
Arg_repressor
HTH_AraC
MarR
Phage_CII
Sigma70_r4
LacI
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AFK52016
UniProt:
I3TGX8
LinkDB
All DBs
Position
complement(179695..181269)
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AA seq
524 aa
AA seq
DB search
MALSQRLDIKLSQALVMTPQLQQAIKLLQLNNIELGAFVDEELLQNPLLVRAEERDEPLT
ALATGDAGDDPRGQDPAFEPGARTELTELVGSGVMPDSEHAPLDTDIAGMFESDGPAPSQ
ETPAQREMDLDPGLGFDAGGPVGRGGDMNFDGDDEGFEARTSEATTLARHLEEQIAVEIP
EGMERAIATVLAGLLDENGYLTMTPVEAAQLIGIDTTRVEAVLTRLKGLDPTGVFARDLA
ECLGLQLAERDRLDPAMQALLANLDLLAQGDRTRLKRVTGVDDEDLDDMIRELRALDPRP
GLRFSADPLQTVVPDILLRPRPDGGWQIELNPETLPRVLVDHAYATTITAQAKSKAEREY
ISERMQTASWLVKALDQRARTILKVGSELVRQQDGFFAHGIRHLRPLTLRDIADAIGMHE
STVSRVTANKYMATPRGLFELKFFFTAAIATADGSGSVSAEAVRHRIKELIDGESADAIL
SDDKLVELLAADGIDIARRTVAKYREGMGIGSSVQRRRAKMARR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcagccagagactggacatcaagctctcccaggcgctggtcatgacgccccag
ctgcagcaggccatcaagctgctgcagctgaacaatatcgaactcggcgccttcgtggac
gaagagctgctgcagaacccgttgctggtccgtgccgaagagcgcgacgaaccgctgacg
gccctcgcgaccggcgacgccggcgacgatccgcggggccaggaccccgctttcgaaccg
ggagcccgcaccgagctgaccgaactggtcggcagcggcgtcatgccggattcagagcac
gcccccctcgacaccgatatcgccggcatgttcgagagcgacggcccggcaccatcccag
gaaacccctgcacagcgcgagatggacctggatccgggcctcggcttcgatgccggcggg
ccggtcggccgcggcggcgacatgaatttcgatggcgacgacgagggcttcgaagcccgc
accagcgaggccaccacccttgcccgccatcttgaggaacagatcgcggtcgagatcccg
gaggggatggagcgggcgatcgcgaccgtgctcgccggcctgctggacgagaacggctat
ctgaccatgaccccggtcgaggcggcccagctgatcgggatcgacaccacacgcgtcgag
gcggtgctgaccaggctgaaggggctggacccgaccggcgtcttcgcccgggatctggcc
gaatgtcttggcctgcagctggctgagcgtgatcgcctggatccggccatgcaggcattg
ctcgccaatctggacctgctggcccagggcgaccggacccggctgaagcgggtgaccggg
gtcgacgatgaagacctcgacgacatgatccgcgagctgcgcgccctggatccgcgcccc
ggcctgcgcttcagcgcggacccgctgcagaccgtggtgcccgacatcctgctccgcccc
cgccccgatggtggctggcagatcgagctcaaccccgagaccctgccccgggttctggtg
gatcatgcctatgcaaccaccatcacggcccaggcgaagtccaaggcggagcgcgaatac
atttccgagcggatgcagaccgcaagctggctggtgaaggcgctggaccagcgcgcccgc
acgatcctgaaggtgggcagcgagctggtacgccagcaggacggcttcttcgcccatggc
atccgccatctgcggccgctgaccctgcgcgacatcgccgatgcgatcggcatgcatgaa
agcacggtcagccgggtcactgccaacaagtacatggccacgccccggggcctgttcgaa
ctcaagttcttcttcaccgccgcgatcgccaccgccgacggctccggatcggtctcggcc
gaggcggtgaggcatcggatcaaggaactgatcgacggcgagagcgccgatgcgattctg
tccgacgacaagctggtcgagctgctggctgcggatggcatcgacatcgcgcgccgaact
gtcgcaaagtatcgggaggggatggggatcggatcctcggtccagcgccgccgggccaag
atggccaggcgctga
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