Tenacibaculum mesophilum: F9Y86_15205
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Entry
F9Y86_15205 CDS
T06242
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9Y86_15205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmp03019
]
F9Y86_15205
03400 DNA repair and recombination proteins [BR:
tmp03400
]
F9Y86_15205
Enzymes [BR:
tmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9Y86_15205
Messenger RNA biogenesis [BR:
tmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F9Y86_15205
DNA repair and recombination proteins [BR:
tmp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F9Y86_15205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QFS29677
LinkDB
All DBs
Position
3345008..3347203
Genome browser
AA seq
731 aa
AA seq
DB search
MNKEQTDLYGSLKKIFGFNQFKGLQEDVVNSVLENKNTFVIMPTGGGKSLCYQLPALMKE
GTAIVVSPLIALMKNQVDAIRGISENHGIAHVLNSSLNKSEIAQVKSDIESGITKLLYVA
PESLIKEEYAEFLRRQKISFVAIDEAHCISEWGHDFRPEYRNLRNIIKQIDNVPIIGLTA
TATEKVQEDILKTLGMSDANVFKASFNRSNLFYEVRPKTKDVEKDIIRFIKQRLGKSGII
YCLSRKKVEEIAQILQVNGINAVPYHAGLDAKTRVKHQDMFLMEDCDVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGYCLTFYSYKDIEKLEKFMANKPVAEQE
VGHALLQEVVGYAETSMNRRKYLLHYFGEEFDEVNGEGADMDDNMRNPKKKHEAKDEVVT
LLSVIRDTSEMYKPKEIVNTIIGKENALLKSHKTNDQPFFGIGKAKDNHYWMALIRQVLV
ADLIKKEIEQYGVLKLTKEGKEFIKNPSSFMMTENHVYKTADDGTIITNEKSAGGVDDKL
VVMLKDLRKKVGKRLGVPPFAVFQDPSLDDMALKYPVTLDELAKVHGVGEGKAKKYGKDF
VALISKYVEDNDIMRPDDLIVKSTGVNSGLKLYIIQNTDRKLPLEDIAKSKGLEMSELIK
EMEAIVFSGTKLNIDYAVDDLLDEDQQEEIHDYFMEAETDKIQEALDEFDGDYDDDELRL
MRIKFTSEIAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagagcagacggatttatatggatcattaaaaaaaatcttcggatttaaccag
tttaaagggctacaagaagatgtggttaacagtgtgttagagaataaaaacacatttgtt
attatgccaactgggggtggtaagtcgctatgttatcaattacctgccttaatgaaggaa
ggtacagcaattgtggtatcgccattaattgctttaatgaaaaaccaagtagatgccatt
aggggtatttctgaaaatcatggaatagcccatgtgttaaattcttcgttgaacaaatcg
gagattgcacaagtaaaatcagatattgaatcgggaattaccaagttattgtacgtagct
cctgaatctttaattaaagaagagtacgctgagtttttaagaagacaaaaaatatcattt
gtagctattgatgaagcgcactgtatatctgaatggggacatgactttagacctgagtat
agaaacctgagaaatattattaaacagattgataatgtaccaattattggtttaactgca
actgcaacagagaaagtacaagaagacattcttaaaactcttggaatgtcagatgcaaat
gtgtttaaagcatctttcaacagatcaaatttattctacgaagttagacctaagactaaa
gatgtagaaaaggacattattcgctttataaaacaacgattaggaaaatcaggtattatt
tactgtttgagtcgtaaaaaagtggaagaaatagcgcaaattttacaagttaacggaatt
aatgctgttccttaccatgcaggtttagacgcaaaaacacgtgtaaagcatcaagacatg
ttcttaatggaagattgtgatgttgtagtagctacgattgcttttggtatgggaattgat
aagccagatgttcgttttgtaatacaccacgacattcctaaaagtttagagagttattat
caagaaactggtagagcaggacgtgatggaggagaaggttattgtttaactttttattcg
tacaaggatatcgaaaagcttgagaagtttatggcgaacaagcctgttgctgaacaagaa
gttggacatgctctattacaagaagttgtagggtatgctgaaacatcaatgaacagacgt
aagtatttactgcattattttggagaagaatttgatgaagtaaatggagaaggcgctgat
atggatgataatatgcgaaatcctaagaagaagcacgaagctaaagatgaagtagtaact
ttattatctgttattagagatactagtgaaatgtataaaccaaaagaaattgtaaacaca
attattggtaaagaaaatgcattgttaaaatctcataaaacaaacgatcaaccttttttt
ggtattggtaaagctaaagataatcattactggatggctttaattcgtcaagttctagtt
gcagatttaatcaagaaagaaatagaacagtatggagttctaaaattaacaaaagaaggt
aaagagtttataaaaaatccatcatcatttatgatgacagaaaatcacgtttataaaaca
gcagatgatggtactattataaccaatgaaaaatcagcaggaggagtagatgataaattg
gtagtaatgctaaaagatttaagaaagaaagtaggaaaacgtttaggagttcctcctttt
gcggtttttcaagacccatctttagatgatatggcattaaaataccctgtaacattagat
gaacttgcaaaggttcatggtgttggtgaggggaaagctaaaaaatatggtaaagatttc
gttgcgcttatttcaaaatatgtggaagacaacgatattatgcgtcctgatgatttaata
gttaaaagtactggagttaattctggattaaagctatacatcattcaaaatactgataga
aaattgcctttagaagatattgctaagtctaaaggtttagaaatgtctgaattaataaag
gagatggaagctattgtgttttcgggaactaaacttaatattgattatgcagtagatgac
ttacttgatgaggatcagcaggaagaaattcatgattattttatggaagctgagacagat
aaaattcaagaagccttggatgagtttgatggagattatgatgatgatgaattacgatta
atgcgtattaaatttaccagtgaaatagctaactaa
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