Tremella mesenterica: TREMEDRAFT_68721
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Entry
TREMEDRAFT_68721 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tms
Tremella mesenterica
Pathway
tms03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TREMEDRAFT_68721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_68721
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_68721
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TREMEDRAFT_68721
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TREMEDRAFT_68721
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf_CCCH_4
zf-CCHC
zf-CCCH_4
zf-CCHC_2
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
18498049
NCBI-ProteinID:
XP_007004792
JGI:
Treme1_68721
LinkDB
All DBs
Position
Unknown
AA seq
346 aa
AA seq
DB search
MALINPPAIASSSTAPLGPALDFVRPDFHQVNLDVEGYLKQERGFKLDADREICRLSLLP
LGCPLPPSLCPYRHTTPSPSNYKPPPPLPTHPREREKKMTVCKHYLRNLCKMGDNCEYTH
DFNLRTMPVCVWFVMAGKCELGGECLYYHPRDRRVECPDYNRGFCRLGPECPRRHIRRQI
CGAYMAGFCPDGPNCKLAHPSPKLPQPESYINPIPPDPTKAGPPPNLPAGYGRWREYKYD
PNAVVYSSPAWLEGGSLSGWRSGGILSANARRDTNSFGSTGGGGQGGGGGGGGGGGGDNS
GQRKAGWIKDLSTVLCFRCNQYGHFANTCPNSAVPGDRGGLRKREA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggcattgatcaatccacctgccatcgcgagcagttcgaccgctcctctcggccctgcc
ctcgatttcgttcgaccagattttcatcaagtcaatctggatgttgagggttatttgaag
caagaaagaggttttaaacttgatgcagatcgagaaatatgtcgactttccctcctccca
ctcggttgtccattacctccttcactatgtccatacagacatacaaccccttctccatcc
aattacaaaccacctccaccacttccaactcatccaagagaaagagaaaagaaaatgaca
gtttgtaaacattatcttcgtaatctatgcaaaatgggagataattgtgaatacacacat
gatttcaaccttcgtacaatgcctgtatgtgtttggttcgtaatggctgggaaatgtgaa
ttaggtggtgaatgtctttattatcatccacgtgatagaagagttgaatgtccggattat
aatagaggtttttgtagattaggacctgaatgtcctaggagacatataagaagacaaatt
tgtggagcttatatggctgggttttgtcctgatggaccgaattgtaaattggctcatcca
tcacccaaacttccccaaccagaatcatatattaaccccatcccacccgatccgaccaaa
gcgggtccaccgccaaaccttccggcgggctacggacgttggcgtgaatacaaatatgat
cctaatgccgtcgtttattcttcgcctgcttggctagaaggtggttctttgtcaggttgg
agatcgggagggattctgtcagccaatgcgaggagagatacgaattcgttcggatcgacc
ggtgggggcggtcaaggtggtggtggtggtggtggaggcggaggtggaggtgataattcc
ggtcagaggaaagctggatggatcaaggatttaagtacagttttatgttttaggtgtaat
caatatggtcattttgccaacacatgtcccaacagtgccgtacctggtgatcgtggaggg
ttaagaaaacgagaggcataa
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integrated database retrieval system