KEGG   Tremella mesenterica: TREMEDRAFT_68721
Entry
TREMEDRAFT_68721  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
tms  Tremella mesenterica
Pathway
tms03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    TREMEDRAFT_68721
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tms03021]
    TREMEDRAFT_68721
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_68721
Transcription machinery [BR:tms03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     TREMEDRAFT_68721
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     TREMEDRAFT_68721
SSDB
Motif
Pfam: zf-CCCH Torus zf_CCCH_4 zf-CCHC zf-CCCH_4 zf-CCHC_2 zf-CCCH_2
Other DBs
NCBI-GeneID: 18498049
NCBI-ProteinID: XP_007004792
JGI: Treme1_68721
LinkDB
Position
Unknown
AA seq 346 aa
MALINPPAIASSSTAPLGPALDFVRPDFHQVNLDVEGYLKQERGFKLDADREICRLSLLP
LGCPLPPSLCPYRHTTPSPSNYKPPPPLPTHPREREKKMTVCKHYLRNLCKMGDNCEYTH
DFNLRTMPVCVWFVMAGKCELGGECLYYHPRDRRVECPDYNRGFCRLGPECPRRHIRRQI
CGAYMAGFCPDGPNCKLAHPSPKLPQPESYINPIPPDPTKAGPPPNLPAGYGRWREYKYD
PNAVVYSSPAWLEGGSLSGWRSGGILSANARRDTNSFGSTGGGGQGGGGGGGGGGGGDNS
GQRKAGWIKDLSTVLCFRCNQYGHFANTCPNSAVPGDRGGLRKREA
NT seq 1041 nt   +upstreamnt  +downstreamnt
atggcattgatcaatccacctgccatcgcgagcagttcgaccgctcctctcggccctgcc
ctcgatttcgttcgaccagattttcatcaagtcaatctggatgttgagggttatttgaag
caagaaagaggttttaaacttgatgcagatcgagaaatatgtcgactttccctcctccca
ctcggttgtccattacctccttcactatgtccatacagacatacaaccccttctccatcc
aattacaaaccacctccaccacttccaactcatccaagagaaagagaaaagaaaatgaca
gtttgtaaacattatcttcgtaatctatgcaaaatgggagataattgtgaatacacacat
gatttcaaccttcgtacaatgcctgtatgtgtttggttcgtaatggctgggaaatgtgaa
ttaggtggtgaatgtctttattatcatccacgtgatagaagagttgaatgtccggattat
aatagaggtttttgtagattaggacctgaatgtcctaggagacatataagaagacaaatt
tgtggagcttatatggctgggttttgtcctgatggaccgaattgtaaattggctcatcca
tcacccaaacttccccaaccagaatcatatattaaccccatcccacccgatccgaccaaa
gcgggtccaccgccaaaccttccggcgggctacggacgttggcgtgaatacaaatatgat
cctaatgccgtcgtttattcttcgcctgcttggctagaaggtggttctttgtcaggttgg
agatcgggagggattctgtcagccaatgcgaggagagatacgaattcgttcggatcgacc
ggtgggggcggtcaaggtggtggtggtggtggtggaggcggaggtggaggtgataattcc
ggtcagaggaaagctggatggatcaaggatttaagtacagttttatgttttaggtgtaat
caatatggtcattttgccaacacatgtcccaacagtgccgtacctggtgatcgtggaggg
ttaagaaaacgagaggcataa

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