Thermoanaerobacter mathranii: Tmath_2139
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Entry
Tmath_2139 CDS
T01250
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmt
Thermoanaerobacter mathranii
Pathway
tmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tmath_2139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmt03400
]
Tmath_2139
Enzymes [BR:
tmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tmath_2139
DNA repair and recombination proteins [BR:
tmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tmath_2139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
ApoLp-III
RecG_dom3_C
DUF924
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ADH61811
UniProt:
D7AT15
LinkDB
All DBs
Position
complement(2159189..2162680)
Genome browser
AA seq
1163 aa
AA seq
DB search
MFTRQIEELKEIKTIEEFLKQGKGPLLAYGLTDSQKAHVAHYIMSKFNKKVLVIAPDDIE
ARKIYEDLYSFSFGNASLFPKREALFYKIDAASQEMVSQRLRVIKKLTRETPHAVVTSID
AAIGKLIPMNLFEKYQMFFKIGDIVNLQEVIKNFVAMGYERVQIVEGKGQFSVRGGIIDV
FSPIEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEEKHIKKGISAV
SKSLNSYLLKIKKSKSGIAEKLQQKFEEIMEEITEAKRVENIHELIDYFYDEVYSIVDYV
GEEAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLPEQSRLFFDYEEILKKAKNSF
LLIVNTLAKPDNDLQPRKIVNFISRSMHPFHGKIDILIDDLKYYKNAGYKVLLLSGNQER
AKILKDTLESFNIDAAVIEDSEYDIQKGQVVIYPASVSKGFEYVDAKFAVITEGEIFGQT
RKSKKTVKIKNADKIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGG
DTLFVPVEQLDLVQKYVGPTDNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLLQLYAKRQ
IAKGHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYGKTE
VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFMERFKEFPVKIEMLSRFRTPKEQAQII
KGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSA
TPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGGQVYFVY
NRVNGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLD
IPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEF
TEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIGAIGYDLYLKLLEEAIRNLKGEAPKEEIT
TTIDIKVNAYIDSSYIEDENSRLEMYKKIASIESREDMVEISEELVDRFGDYPKPVEALL
EIAYLKAIASKANITEITEKGNTVILKFKNIESVKMEVIEKIIKEYGGNLIFSNQLQPYL
TYRFNKKETLQKELIELVEKMSA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtttactcgccaaatagaagaattaaaagaaataaaaacgatagaagaatttttaaaa
caagggaaaggcccccttttagcttatgggcttacagattctcaaaaagctcatgttgcc
cattatataatgagcaagtttaataaaaaagtgttagttattgctcctgatgatatagaa
gcgagaaaaatatacgaagatttgtattcttttagttttggcaatgcctctttatttccc
aagagagaagctttgttttataaaatagatgctgccagtcaagagatggtatctcagagg
ttaagagtaattaaaaaattgacaagggaaactccccatgcggtagttacttctatagat
gcagcaataggcaaactcatacccatgaatttatttgaaaagtatcagatgttttttaag
ataggtgatattgtaaatttacaagaggttataaaaaattttgtggcaatgggatatgaa
agagttcaaatagtggaaggaaaagggcaatttagtgtgagagggggaataattgacgtt
ttttctcctattgaagaatatccttatagaattgaactttttgacgatgaaatagattcc
ataaggacttttgatgtgatcacccaaaggtctttagaaaatattgataaaataaatatt
ttccctgctacagagtttatcgcggaagaaaagcatattaaaaaagggatttcagcggtt
tccaagtctttaaattcctatttattaaaaataaaaaaatcaaaaagcggaattgcagaa
aaattacagcaaaaatttgaggaaattatggaggagattacggaagctaaaagggtggaa
aatattcatgaacttatagattatttttatgatgaggtttattctattgttgattatgtg
ggagaagaggcagttattattttagacgagagcagccgtattaagcaaagggtaaataac
cttcaaatggaattcaatgaaaatttcaaggctttattagaaaaaggagaagttttgcca
gagcaaagcaggctttttttcgattatgaggaaatattaaaaaaggcaaaaaatagtttt
ttactcatagtaaatactttagcaaagcctgacaatgatctacagccgcgaaaaattgtt
aattttatatcaaggtctatgcatccttttcacggcaaaattgatattttgatagatgat
ttaaagtattataaaaatgcaggatataaagttttgcttttaagtgggaatcaggaaaga
gcaaaaattttaaaggatacacttgaaagttttaatattgatgcggcagtgattgaagac
agtgaatacgatatacaaaaagggcaagtagtgatatatcctgcctctgtcagcaaggga
tttgaatatgtggatgcaaaatttgctgtcataactgagggagaaatttttggacagact
agaaagagcaaaaaaactgtgaaaattaaaaacgccgataagataaagagctttactgaa
ttagaagtagggtcatatgtcgtacatgtaaattatggtataggaaagtatgaaggcata
gaaaagataaaagtagatgggattataagggattatttaaaaataatttatgccggggga
gataccctttttgtaccggtggaacaattagaccttgtgcaaaaatatgtagggcctaca
gacaatcctcctaaattaaataaattggggggcagcgaatggcttaaagcaaaaagaaaa
gccaaaaaagcagtagaagaccttgctaaggatttgttacaactttacgccaaaagacag
atagctaaaggacatgctttttctcctgatactccatggcaaagggagtttgaagagcaa
tttccctatgaagagacagaagaccagttaaggtgtataaaagagattaaagaggacatg
gaaaaagataagccaatggatagacttctctgtggagatgtggggtatggtaagacagaa
gttgctttaagggctgcttttaaagcagtagctgatggaaagcaagttgcttttttgtgc
cctacaactatcttggcttatcagcattatactaatttcatggaaaggtttaaggaattt
cctgtgaagatagagatgcttagtcgttttaggactcccaaagaacaagcacaaataatt
aaaggcttggcggaagggactatcgatattattgttggtactcataggcttttacaaaat
gacgtgaaatttaaggatttaggacttttaattatagatgaagagcagaggtttggagtt
gttcataaagaaaaaataaaaaaactcaaagaaaatatagacgttttgacattatcagca
actcctattcctagaactttacacatgtctttaattggcataagggatatgagcgtatta
gagaatcctcctgaagacagatttccagtagaaacttatgtggtagaattcaatgaagag
ttaataaaagatgctattttgagggaaattggaagaggaggacaagtctattttgtttac
aatagagtaaatggcatagaaaagatggcttctttggtaaaagatttggttcccggttgc
agggtagctgtggctcatgggcaaatggaggaaagtcaattagaaaaagtgatgattgac
tttttaaatggggaatacgatgttttagtaagcactacaataattgagacagggcttgat
ataccaaatgtgaataccattatagtttatgatgcagataagttagggctatctcaattg
tatcaattaagaggaagagtgggtaggtcaaatagactggcttatgcctattttacctat
agaaaggataaagttttaagcgaagtggctgaaaaaaggttagaggcgataaaagagttt
actgaatttggttctggatttaaaattgccatgagggatttagagataagaggtgcaggt
aatctccttggagcagaacaacatggccatattggcgcaattggttatgacttgtattta
aagcttttagaggaggctatacggaatttgaagggagaagctcctaaggaggagattact
accacaatagatataaaagtcaatgcttatattgactcttcctatattgaagacgagaat
tcaagattagagatgtacaaaaaaattgcctctatagaatctagagaagatatggtggaa
atttcagaagagcttgtagataggtttggagattatccaaagcctgtagaggcactgctg
gaaattgcttatttaaaggctattgcttctaaagccaatattactgaaataacagaaaaa
gggaacactgttattttaaaatttaaaaacatagaatcggttaaaatggaggttatagag
aaaataataaaagaatatggaggaaatttaatattttcaaatcaactacagccatatcta
acttataggttcaataaaaaagagactctgcaaaaagagcttattgaattggtagaaaag
atgtctgcgtaa
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