Trichechus manatus latirostris (Florida manatee): 101361746
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Entry
101361746 CDS
T05135
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101361746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101361746
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101361746
Spliceosome [BR:
tmu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101361746
Complex C
U4/U6.U5 tri-SnRNP related factors
101361746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_30
AAA_19
SecA_DEAD
nSTAND3
Flavi_DEAD
SRP54
T2SSE
Motif
Other DBs
NCBI-GeneID:
101361746
NCBI-ProteinID:
XP_004390429
UniProt:
A0A2Y9EBU6
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MATSAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLSGPAQ
DFALRLWNKVPRKVVVEKPARAAEREARALLEKNRSYKLLEDSEESSEETVGRAGSSLQK
KRKKRKHLRKKCHEEEDEEEEVVSEKEKKKTGGSKQQTEKPESEDEWERTERERLQDLEE
RDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAK
REREKLEDLEAELADEEYLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNR
YHMPEETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVL
EEEETIEFVRATQLQGDEEPLAPPPQAQAQQKESIQAVRQSLPVFPFREELLAAIASHQV
LIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEV
GYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIK
DVARFRPELKVLVASATLDTARFSTFFDDAPIFRIPGRRFPVDIFYTKAPEADYLEACVV
SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA
RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA
SANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMH
FDFLDPPPYETLLLALEQLYALGALNHLGELTMSGRKMAELPVDPMLSKMILASEKYSCS
EEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQW
CYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRS
GYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYK
AKELEDPHAKKMPKKIGKTREELG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatcggcggggctggagcgctgggtgcaagacgagctgcactcggtactgggg
ctgagcgagcggcacgtggcccagttcctgatcggcaccgctcagcgctgcgcctcggcc
gaggagttcgtgcagcgactgcgagacaccgacaccttggacctcagtggtccggcccag
gatttcgccctaagactctggaacaaggtaccacggaaggtggtggtagaaaagccagct
cgggcagctgagcgagaggcccgagccctgctggagaagaaccgatcttataagttgctg
gaagacagcgaggagagcagtgaggagactgtgggtagggctgggagtagccttcagaag
aagcgtaagaaacggaaacacctcaggaagaaatgccacgaggaggaggatgaagaggaa
gaagtggtctcggagaaagaaaagaagaagacaggggggagtaaacagcagacggagaag
ccagagtcggaggatgagtgggagcggacagagcgtgagcgccttcaggacctggaggaa
cgtgatgcctttgccgagcgcgttcggcagcgggacaaggatcggactcgcaatgtcctg
gagcggtcagacaagaaggcttatgaagaggctcaaaagcgcctcaagatggctgaggaa
gaccggaaagccatggtccctgagctgcgcaagaaatcccgccgagagtacctggccaag
cgggagcgagagaagcttgaggacctggaggcagagctggctgatgaggagtaccttttt
ggggatgtggagctgagccggcatgagcggcgggagctcaaatacaagcggcgagtgcgg
gacctggcccgggagtaccgggcagccggggagcaggagaagctggaggccacaaaccgc
taccacatgcccgaggagacccgaggacagccagcacgagctgtggatttagtagaagag
gaatcaggcgcccccggggaggagcagcggcgctgggaggaggcccggctgggagcagca
tctctgaagtttggagcccgagatgctgcctcccaggagcccaagtatcagctggtgctg
gaggaggaggagaccattgagtttgtccgggccactcagctccagggtgatgaggaaccg
ttagctccaccccctcaagcccaggcccagcagaaggagtccatccaggccgtccgccaa
agcctcccagtgtttccattccgtgaggagctcctggctgctattgccagtcatcaagtc
ctcatcattgaaggcgagacaggctcggggaagaccacccaaatcccccagtatctcttt
gaggagggttacacaaagaagggtatgaagattgcctgcacccagccccggagggtggca
gccatgagtgtggcagcccgagtggcccgggagatgggcgtgaagcttgggaatgaggtt
ggctacagcatccgctttgaggactgcacgtcagagcgaactgttctccgctacatgaca
gatgggatgcttctccgggagttcctctctgagcctgacctcgcgagttacagcgtggtg
atggtggatgaggctcatgaacgaacgctgcacacagatattctctttggattgatcaag
gatgtggctcgcttccgcccagagctcaaggtcctggtggcttcagctacactggacaca
gcccgtttttctaccttctttgatgatgcccccatcttccgaatccctggacgcaggttt
ccagttgacatcttttataccaaggctccagaggctgactacctggaagcctgtgtagtg
tctgtgctgcagatccacgtgacccagccgcctggggatatcctagtgttcttgacagga
caggaggagattgaggctgcctgcgagatgctccaggatcgctgccgccgcctgggctcc
aaaatccgagagcttctggtgctgcccatttatgccaacctgccctctgacatgcaggct
cggatcttccagcctacgccccctggggcacgaaaggtggttgtggcaacaaacatcgct
gagacatccctcaccattgagggcatcatttacgtgctagatccaggattctgtaagcaa
aagagctacaacccccgcacaggcatggagtcactcactgtcacaccctgcagcaaggct
tcagccaatcagcgagctggccgtgcgggtcgtgtggctgcaggcaagtgcttccgcctg
tataccgcctgggcctatcagcatgaactcgaggaaacgacggtgcccgagatccagagg
accagcctgggcaatgttgtgttgctgctcaagagcttagggatccatgacctaatgcac
tttgatttcctggaccctccgccgtatgagaccctgctgctggctttggagcagctgtac
gctctgggagccctcaaccacctcggggagctcaccatgtctggtcggaagatggcagag
ctgccggtggaccccatgctgtctaaaatgatcttggcttctgagaagtacagctgctca
gaggagatcctgacagttgctgccatgctgtctgtcaacaactccatcttctaccggccc
aaggacaaggtcgtccatgctgacaatgcccgtgtcaacttcttcctccctggtggggac
cacctggttctactcaacgtttatacacagtgggctgagagtggctactcttcccagtgg
tgctatgagaacttcgtacagttcagatcgatgcgccgagcccgggatgtgcgggaacag
ctagaggggctcttggagcgtgtggaagttggtctcagttcttgccagggggactatatc
cgagtacgcaaggccatcactgctggttacttctaccacactgcacggttgactcgtagc
ggttatcgcacagtgaaacagcagcagacggtgttcattcatcctaactcctccctcttt
gaggaacagccacgttggctgctctaccatgaacttgtcttgaccaccaaggagttcatg
agacaggtactggagattgaaagcagttggcttctggaggtggctccccactactataag
gccaaggagctagaagatccccatgctaagaaaatgcccaagaaaataggcaagacacga
gaagagctagggtaa
DBGET
integrated database retrieval system
