Tetraodon nigroviridis (spotted green pufferfish): GSTEN00027817G001
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Entry
GSTEN00027817G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTEN00027817G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tng03041
]
GSTEN00027817G001
Enzymes [BR:
tng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSTEN00027817G001
Spliceosome [BR:
tng03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
GSTEN00027817G001
Complex B
GSTEN00027817G001
Complex C
U2 SnRNP specific factors
GSTEN00027817G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Adeno_E1B_19K
Motif
Other DBs
NCBI-ProteinID:
CAG07234
UniProt:
Q4RWJ8
LinkDB
All DBs
Position
3
AA seq
737 aa
AA seq
DB search
QNQAAKDMRKLEEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEDNIDYPP
FEKNFYNEHEELSSLNGTQVIELRQKLNLRVSGAAPPKPSTSFAHFGFDEQLMHQIRKSE
YTQPTPIQCQGVPIALSGRDMIGIAKTGSGKTAAFIWPMLVHIMDQKELEAGEGPIAVIV
CPTRELCQQIHAECKRFGKAYSLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK
KKATSLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIERLARDI
LVDPIRVVQGDIGEANEDVTQVVELLLSGSDKWSWLTRRLVEFTSSGSVLIFVTKKTNSE
ELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNMPILVATDVAARGLDIPSIRTVVN
YDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKDSSFAGDLVRNLEGANQAVSKELMDLA
MQNPWFRKSRFKAGKGKKPNIGGGGLGYKERPGLGAESSERSGGTSSFLSSSLEGYSKPT
TGALGERVNAMRQAFQAQYKSSFVAASGNPPKLSVKTSSTSGWTSAGSLSSVPTEPPGGS
LRSHGITMLGFTSAGSLSSVPSPQPSPQPSPQPNPQPSSHAEDRGRHGDGHHHQHSDRSD
RHGRDDRHGDRDRHGDRVRERHGDRDRHSSSSSRHSDSRNGERRDREERRSERDGGDRDD
SFAVPEPPKRRKSRWDN
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
cagaaccaagcagccaaagacatgaggaaactagaggaaaaggagaaaaagtcagccaag
ggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctacatggca
gagaaccctacagctgggctcacccaggaggaagaggaggacaacatcgattacccgccc
tttgagaaaaacttctacaacgagcacgaggagctcagcagcttgaatggaactcaagtg
attgagttaagacagaagttgaacttgagggtatctggtgctgctcctccgaagccttct
acaagttttgcccatttcggctttgatgaacagcttatgcaccaaatccgcaagtctgag
tacactcagcccacacccattcagtgtcagggtgttcccattgctctctctggacgtgat
atgatcggaatagccaagaccggcagtggtaaaactgccgcctttatttggccaatgctg
gtccacatcatggaccagaaggagctggaggcaggagaaggacccatcgcagtcatagtc
tgtcccaccagagagctttgtcagcaaatccacgcagagtgcaagcgctttggaaaagcc
tactcgttgcgctctgtggctgtttacggaggcggcagcatgtgggagcaggccaaagct
ctgcaggagggagcggagattgtggtgtgcaccccgggccgtctgatcgaccacgtcaag
aagaaggccacgtccctgcagagagtgacctacctggtgtttgatgaagcggatcgcatg
ttcgacatgggctttgaatatcaggttagatccatcgccagccacgtccgtcctgacaga
cagacccttttgttcagcgctactttccggaagaagatcgagaggttggccagggatatt
ttggtggatcctatccgtgtcgtgcagggcgacattggagaggccaatgaagatgtgact
caggtggtggagctgctgctcagcggttcagacaaatggtcctggctgacccggcggctc
gtggagttcacctcctccggatcagttctgatcttcgtcaccaagaagaccaactcggaa
gaactggctaccaacctcacccaggagggttacagcctgggcctgctgcacggagacatg
gaccagagcgagaggaataaagtcatcagcgacttcaagaagagcaacatgccaattctg
gtggccacagacgtagctgcccgcggtctggacatcccatccatccgcactgtcgtcaac
tacgatgttgcgcgcgacatcgacacgcatacccacaggattgggcgaaccggtcgcgct
ggggagaagggcgtggcctacacgctgctcaccagtaaggactccagctttgccggcgac
cttgtgagaaatctggagggagctaaccaagcggtttccaaggagctgatggatttggcc
atgcagaatccctggttcaggaaatcccgatttaaggctgggaaagggaagaagccaaat
atcggcggaggtggtcttggctacaaagaaagacctggcctgggggctgaaagctctgaa
cgtagcggcggcaccagcagcttcttgtcctccagcttggaaggctacagcaaaccaacc
actggtgctctcggagaacgtgtgaacgccatgagacaagctttccaggctcagtacaag
agtagttttgtggctgcgtctggtaaccctccgaagctaagcgtgaagaccagcagcaca
tctggctggaccagtgccggcagcctgagctctgtgcccacagagcccccgggtggctca
ctgcggagccacggcatcaccatgctgggcttcaccagcgctggttccctgagctcggtg
cccagcccacagccaagcccacagcccagcccacagcccaacccacagcccagctcacat
gcagaggaccgggggcgccacggcgacggtcaccaccatcagcacagcgacaggagtgac
agacacggcagagatgatcgccacggagacagggaccgccatggggacagagtccgagag
cgccacggagaccgggaccgccacagcagcagcagcagccgccacagcgacagccggaat
ggagaaaggagggacagggaggagcggaggagtgagagggatggaggagaccgagacgat
agcttcgctgtcccagaaccaccaaagcgtagaaagagcaggtgggacaac
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integrated database retrieval system
