KEGG   Thermosediminibacter oceani: Toce_0249Help
Entry
Toce_0249         CDS       T01289                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
toc  Thermosediminibacter oceani
Pathway
toc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:toc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Toce_0249
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:toc03400]
    Toce_0249
Enzymes [BR:toc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Toce_0249
DNA repair and recombination proteins [BR:toc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Toce_0249
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ADL07035
UniProt: D9S0A7
LinkDB All DBs
Position
complement(246129..247055)
Genome map
AA seq 308 aa AA seqDB search
MIKPGIPFIPMEPLPHPKPFDDEKYGFQIKWDGTRIVAHLSGGVELFNRKMKRRTAQYPE
VAGTLSDVLGDSDAVLDGEMITLIGGKPSFQQLMRRDWATDPGTINYLASRIPVTYVVFD
ILYLNGKSLIDLPFSRRYHILKSTLRSSDPVVVTDTFPGRGIALYEIARERGLEGIVAKR
LDSVYQIGKKSDKWLKIKNRREVTALVGGFLAEGKSVRSLFLGQLVEGELIYIGRASSGL
GAETSRVLYDLLSKSAKESCPFANPPQIERREKPVWVSPSVAVEVEFLDYTDEGYLRHPV
IRRVEFGS
NT seq 927 nt NT seq  +upstreamnt  +downstreamnt
atgataaagcccgggatacccttcatacccatggagccgctgcctcacccgaagcccttc
gacgacgaaaaatacggcttccagataaagtgggacggcaccaggatagtagcccacttg
agcggcggcgtggagcttttcaaccggaaaatgaaaaggcgcaccgcccagtacccggag
gtggcaggaacgctttcggatgtcctcggggactccgacgcggtactggatggagagatg
ataactttgatcggcggaaagcccagcttccagcagttgatgaggcgggactgggccacc
gacccgggcaccataaactatctggcctcaaggatacctgtaacctacgtggttttcgac
atcctttacttgaatggaaagagcctcatcgacctgccattttcccggcggtaccacata
ttaaagtccaccctgaggtcctcggacccggtggtggtgaccgataccttcccgggccgg
ggaatcgccctttatgagatcgccagggagaggggacttgaaggcatagtagccaaaagg
ctggacagcgtttaccagatcgggaaaaagagcgacaaatggctcaaaatcaaaaaccgc
cgcgaggtaaccgccctggtgggcggctttctggccgaaggaaaaagcgtgcgctccctg
tttctggggcagctcgtcgagggtgaactcatttatatcggcagggcgtccagcggactt
ggtgccgaaacgagcagggtcctatacgatttgctttcaaaatccgcaaaggagtcatgc
ccttttgccaacccgccgcaaatcgaaaggagggaaaagcccgtatgggtcagcccttcg
gtcgctgttgaagtggaatttctcgattataccgacgaaggttatctcaggcatccggta
ataaggcgggtggaattcgggtcatga

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