Thalassolituus oleivorans R6-15: R615_04225
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Entry
R615_04225 CDS
T03056
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R615_04225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tor03019
]
R615_04225
03009 Ribosome biogenesis [BR:
tor03009
]
R615_04225
Enzymes [BR:
tor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R615_04225
Messenger RNA biogenesis [BR:
tor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R615_04225
Ribosome biogenesis [BR:
tor03009
]
Prokaryotic type
rRNA helicases
R615_04225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
Atrophin-1
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHK15189
LinkDB
All DBs
Position
912997..914880
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AA seq
627 aa
AA seq
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MTDTISTGFASLGLPFPILRTLEELGYETPSAIQEHSIPPLLEGKDVLGMAQTGTGKTAA
FALPILARTQADFKSPQVLVLAPTRELAQQVAEAVKTYSRHMPGIEVTAIYGGADYGSQL
RDLKRGPQWVVGTPGRVMDHLRRGTLSLADIKAVVLDEADEMLRMGFIDDVNWILEQTPA
SRQVALFSATMPREIQRVAETHLNNPVQVKIETKTTTNDKIRQRYWFVGGAHKNDALLRI
AETEEFDAMMVFVRTKQATEEVAEFMVSNGFKCSPLNGDIPQAQREKAVERLKAGQLDII
VATDVAARGLDVERISHVINYDIPQDTESYVHRIGRTGRAGRNGEAIVFVRGREKRMLRD
IERATRQPIEEMPLPSAEMVNEKRRVMFQARVLDSLHPEKNKVYREMIEKILSEHPVDAM
DVAAAIARMVQGDKPLFIDEQEDARAQKRAQEQNSRESRDRPERGERRERSGERERGAPR
SKMPASASPMPLKGNPDMAMARYMVGIGYDDGLKPGNLVGAIANEADLESRFIGHIEIFE
NYSVIDLPAGMPEPVMNTLRKARVCGRPLSIKTYKESDIPESTGRSAPPRRAGGSGKPGG
AGGRGKPRSSNDSRGDSRPPQRKRREA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatacaatcagcacaggcttcgcaagcctgggccttccttttcctattcttcgc
actctagaagagttgggttacgaaactccttctgctatccaagaacacagtattccgcca
ttgcttgaaggcaaagacgtactgggtatggcacaaaccggtaccggtaaaacggccgcg
ttcgcattacctatcttggctcgcactcaagccgactttaaaagcccacaagtattggtg
ttagcaccaacgcgtgaactggcgcaacaggtggctgaagccgttaaaacctatagccgt
cacatgccgggcattgaagtaactgctatttatggtggtgccgattacggcagccagcta
cgtgatttgaaacgtggcccacaatgggttgttggtactcctggccgtgtaatggatcac
ttacgtcgcggtacgttgagcttggctgatattaaagccgttgttctagacgaagcggac
gaaatgctgcgcatgggctttatcgacgacgtaaactggattctggaacaaactccagcc
agccgtcaggttgctttattctctgcgactatgccgcgtgagattcagcgtgttgctgaa
actcacctgaataatccagtacaagtaaaaatcgaaaccaaaacgacgaccaacgataaa
attcgtcagcgttattggtttgtcggtggcgcgcataaaaatgatgcgttattgcgtatt
gccgaaaccgaagaatttgacgccatgatggtgttcgtacgtaccaagcaagcaacagaa
gaagttgcagagtttatggtcagtaacggctttaaatgttcaccattaaacggtgatatt
ccacaagcacaacgcgaaaaagcggtagaacgcttaaaagcaggccagttggatattatt
gttgcaactgacgttgccgctcgtggtttggacgttgagcgtatcagccacgttatcaac
tacgatattccacaagataccgaatcctacgttcaccgtattggtcgtactggtcgtgcc
ggtcgtaatggtgaagccattgtcttcgtacgtggccgtgaaaagcgtatgttgcgtgat
atcgaacgtgctactcgtcagcctattgaagaaatgccactaccatcggcagaaatggtt
aacgaaaaacgtcgtgttatgttccaagcacgcgttttagatagcctgcacccagagaaa
aacaaagtgtatcgcgaaatgatcgaaaagatcttgagcgaacacccggtggatgcgatg
gatgttgcagccgcgattgctcgcatggtgcaaggcgataagccattgttcatcgacgaa
caagaagatgcacgtgcacaaaaacgtgcgcaagaacaaaatagccgtgaatcacgcgac
cgcccagaacgtggcgagcgtcgtgaacgcagtggtgaacgcgaacgtggtgctccacgc
agcaaaatgccagccagcgcttcgcctatgccattaaaaggtaaccctgatatggcgatg
gcacgttacatggttggcattggctacgacgatggcttgaagccgggtaaccttgttggc
gctatcgcgaacgaagccgatttagaaagccgttttattggtcacattgaaatttttgaa
aattattctgtgatcgatttaccagcgggtatgccagaaccagtgatgaacaccctgcgt
aaagcacgcgtatgtggtcgtcctttgagcatcaagacctacaaagaaagtgacatccct
gaatcaacaggtcgctctgctccaccgcgtcgtgcgggtggctcaggcaagcctggtggt
gctggcggtcgtggcaagccacgtagcagtaatgattcacgtggtgattcacgtcctccg
cagcgtaagcgtcgcgaagcgtaa
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