Thalassolituus oleivorans R6-15: R615_05750
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Entry
R615_05750 CDS
T03056
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03420
Nucleotide excision repair
tor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R615_05750
03430 Mismatch repair
R615_05750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tor03400
]
R615_05750
Enzymes [BR:
tor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R615_05750
DNA repair and recombination proteins [BR:
tor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R615_05750
MMR (mismatch excision repair)
Other MMR factors
R615_05750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
NTPase_1
FliH
DEAD
Motif
Other DBs
NCBI-ProteinID:
AHK15423
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All DBs
Position
1238474..1240105
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AA seq
543 aa
AA seq
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MSDFSFTPDQKAAICSNSNMVITACPGSGKTTVVAEKIRNEVKDLPSYRGVIGITFTVKA
SKELRSRCKRNACDTKMSFFGTIDHFCLSEIIHPFLARVLERKKHQLECIKLDEISKCVM
DKLSVIPHYSEEVTSTSFKCLEDDIGTLFDHGFVLLELLGVIANHVITESHACQRYIAAK
YNSVYIDEYQDSSEPQHVLFLKLLELGLVGVAVGDVQQSIYAWRGSDPVFIKELTNKPDV
FEHHIVNINHRCHPSITNYSNRLYDAECDLLPTSDIRVYRRCYTGTQVDVTEKINESIEV
ALKNNLVESYSQIGILVRNNISLEFLSNGLNVPFRIFDEDPLAVRNTKVCNLFSQLLRFR
FDEHHRLNDVVEYIQSFTSVSKNSLSVLRKTISTIGDKVQDELSHTIVDITGQVLNVGIS
ASDKELINTICLESRLLQHYKPINENEVQVMTLHKSKGLEFELVYHLDLYDWIHPKRKFV
RGCFDVIYDNWEQELNLHFVGITRAKNYCVLVTSNSRLNRDYETKTGNPSQFFSLPGLDG
LYR
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatttctcgtttactccagatcaaaaagcagcaatatgttcaaattcaaatatg
gtcattactgcttgccctggaagtggaaagactactgttgttgcagaaaagataagaaat
gaagttaaagatcttccgtcttatcgaggtgttattggaattacttttactgtaaaggcc
agcaaggaattaagaagccgatgtaagaggaatgcttgcgatactaaaatgagctttttt
ggcactattgatcatttttgtttgagtgagattatacacccttttttagcaagagtgctt
gaaaggaaaaagcaccagctagaatgcattaagcttgatgaaatatctaaatgtgttatg
gataaattgagcgtaataccacattacagcgaagaggtaacctcaacctcttttaaatgc
ttagaagatgatattggcacattattcgatcatggttttgtcttgctcgaactgcttggt
gtgatagccaatcatgtcataacggaatctcatgcttgtcaaagatatattgcagcaaaa
tacaactcggtatacatagatgaatatcaagactcctctgagccacagcatgtactcttt
ctcaagttattagaactggggctagtaggtgttgcagttggtgatgtacagcagtctatc
tatgcttggcgtgggagtgatcctgtatttattaaagaattaacaaacaaacctgatgtc
ttcgaacatcatatcgtaaatatcaatcatcgctgtcacccatcaattactaattattct
aaccggctttacgacgctgaatgtgatttattgccaactagtgatatcagagtatatagg
cgctgctatacaggcactcaagtagatgttactgaaaaaataaatgagtcaattgaagtt
gcgcttaaaaacaatctagttgaatcatactcgcaaataggaatactcgtaagaaataac
atatctctagaatttcttagtaatggattgaatgtaccgtttcgaatctttgacgaagac
ccattggcagttagaaatacaaaggtttgtaatttgttttctcagcttttaaggtttcga
tttgacgagcatcatcgtttaaatgatgttgttgagtatatacagtcatttacttcagtt
tcgaagaatagtttatctgtattgcgtaaaacgatatcaactattggtgataaagttcaa
gatgaactatcacatacgattgtggatataactggtcaagtcttaaatgtcggtataagt
gcttcagataaagagctcattaatacaatctgcttggagtctaggttgcttcagcactat
aagccgataaatgaaaatgaagttcaagttatgacacttcataaatctaaagggctagag
tttgagcttgtttatcacctggatctatacgattggattcaccctaaaagaaagtttgtt
cgaggttgcttcgatgtaatatatgataattgggagcaggagttgaatttacactttgtt
gggataactagagcgaaaaattattgtgttctagttacaagcaatagccgtctcaatcga
gactatgaaaccaaaacaggaaatccctctcaattcttttcgctgcctggattagatgga
ttgtatcgatag
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