KEGG   Thermococcus pacificus: A3L08_01510Help
Entry
A3L08_01510       CDS       T05192                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tpaf  Thermococcus pacificus
Pathway
tpaf03030  DNA replication
tpaf03410  Base excision repair
tpaf03420  Nucleotide excision repair
tpaf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tpaf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A3L08_01510
   03410 Base excision repair
    A3L08_01510
   03420 Nucleotide excision repair
    A3L08_01510
   03430 Mismatch repair
    A3L08_01510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tpaf03032]
    A3L08_01510
   03400 DNA repair and recombination proteins [BR:tpaf03400]
    A3L08_01510
Enzymes [BR:tpaf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A3L08_01510
    6.5.1.6  DNA ligase (ATP or NAD+)
     A3L08_01510
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     A3L08_01510
DNA replication proteins [BR:tpaf03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    A3L08_01510
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     A3L08_01510
DNA repair and recombination proteins [BR:tpaf03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     A3L08_01510
   NER (nucleotide excision repair)
    Other NER factors
     A3L08_01510
   MMR (mismatch exicision repair)
    Other MMR factors
     A3L08_01510
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 TPR_2 Peptidase_S7 TPR_1 TPR_8
Motif
Other DBs
NCBI-ProteinID: ASJ07614
UniProt: A0A218PA06
LinkDB All DBs
Position
complement(256734..258413)
Genome map
AA seq 559 aa AA seqDB search
MRYSELADLYRRLEKTTLKTLKTKFVADFLKKTPDELLEIVPYLILGKVFPDWDERELGV
GEKLLIKAVSIATGVPEKEIEDSVKDTGDLGESVALAIKKKKQRSFFSQPLTIKRVYDTF
VKVAEAQGEGSQDRKMKYLANLFMDAQPEEGKYIARTVLGTMRTGVAEGILRDAIAEAFK
VKPEMVERAYMLTSDFGYVAKVAKLEGNDGLAKVTVQIGKPIRPMLAQNAASVKEALVEM
GGKAAFEIKYDGARVQVHKDGDRVVIYSRRLENVTKSIPDVVSAVLESLKAEKVIVEGEL
VAVGEGGRPRPFQFVLRRFRRKYNIDEMIERIPLELNLFDVLYVDGETLINLPFSERRKR
LEETIAESEKIKLAVQLVTNNVDEAQEFYEKALELGHEGVMAKRLDSVYEPGNRGKKWLK
VKPTMEDLDLVIIGAEWGEGRRAHLLGSFLVAAFDPHSGEFVPVGKVGSGFTDEDLVEFT
KMLKPLIVREEGKFVEIEPKVVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPEEAD
TIERVARLYEFQEKFKAKR
NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt
atgcggtactccgaactggcggacctttacagaaggctggaaaaaacaacgctaaagaca
ctaaaaacgaaattcgttgccgactttctgaagaaaacccccgacgaattactcgagata
gtcccctacctaatcttgggcaaagtcttcccggactgggacgagagggaactcggcgtc
ggtgaaaaacttttgataaaggccgtctccattgcaacgggcgttcctgaaaaggagata
gaggactccgtcaaggacaccggcgatttgggtgagagcgttgcactcgcaatcaagaaa
aagaaacagaggagtttcttcagtcaacctctaacgataaagcgcgtttacgacaccttc
gtcaaggttgccgaagcccagggtgaggggagccaggacagaaagatgaagtatctggcg
aacctcttcatggacgcccagcccgaagaggggaagtacatagcgagaactgtactcggg
actatgagaaccggcgttgctgagggtatccttagggacgcaatagcagaggccttcaaa
gtcaaacctgagatggttgagagggcgtacatgctcacgagcgactttggttacgtggca
aaggttgcgaagctcgaaggaaatgatggtttagcaaaggtaactgtgcagataggaaag
cccataaggccgatgctcgcccagaacgcggccagcgtaaaggaagcactggttgagatg
ggaggaaaagccgcattcgagataaagtacgacggtgcccgcgttcaggttcacaaggac
ggtgacagggtcgtcatatactcccgcaggctggagaacgtcacgaaatccattcccgac
gtcgtctctgcggttttggagagcctgaaagctgagaaggtcatcgtggagggtgagctt
gttgctgtgggtgagggcggaaggccaaggcccttccagttcgtcctcaggcgctttagg
aggaagtacaacatcgatgagatgatagagagaatcccccttgagctgaacctcttcgat
gtcctctacgttgacggcgagaccctcatcaacctgcctttctccgagaggaggaagagg
ctggaggagaccattgcagagagcgagaagataaagctcgccgtccagctggtgaccaac
aacgtcgatgaggctcaggagttttacgaaaaggctttggagcttgggcacgaaggagta
atggccaagcgcctcgattccgtctacgaacccggcaaccgcggaaagaagtggcttaag
gtcaagccaacgatggaggaccttgacctcgtcataataggagcggagtggggagaggga
aggcgcgcacacctcttaggatcgttccttgttgcggccttcgatccgcacagcggggag
ttcgtcccggtcggaaaggtcggtagcggcttcacggatgaagacttagtcgagttcacc
aagatgctgaagccgctcatagtcagggaagaaggcaagttcgtcgaaatcgagccaaaa
gtggtcatagaagtaacctaccaggaaatacagaaaagccctaagtacaagagcggcttc
gccctgaggttcccgcgctacgttgctttgagggaagacaaaagcccggaggaggccgac
acgatagagcgcgtagcccggctctacgagttccaggagaagttcaaggcgaaaaggtga

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