KEGG   Thermus parvatiensis: AV541_05275
Entry
AV541_05275       CDS       T04274                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
tpar  Thermus parvatiensis
Pathway
tpar03030  DNA replication
tpar03410  Base excision repair
tpar03420  Nucleotide excision repair
tpar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tpar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AV541_05275
   03410 Base excision repair
    AV541_05275
   03420 Nucleotide excision repair
    AV541_05275
   03430 Mismatch repair
    AV541_05275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tpar03032]
    AV541_05275
   03400 DNA repair and recombination proteins [BR:tpar03400]
    AV541_05275
Enzymes [BR:tpar01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AV541_05275
DNA replication proteins [BR:tpar03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AV541_05275
DNA repair and recombination proteins [BR:tpar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AV541_05275
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AV541_05275
   MMR (mismatch excision repair)
    DNA ligase
     AV541_05275
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AV541_05275
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT HHH PTCB-BRCT DNA_ligase_ZBD BRCT_2 RNA_pol_A_CTD AphA_like UPF0758_N
Other DBs
NCBI-ProteinID: AMA75570
UniProt: A0A0X8D903
LinkDB
Position
945453..947474
AA seq 673 aa
MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLFRELKELEERFPELKSPDSP
TEQVGARPLESTFRPIRHPTRMYSLDNAFSFEELKAFEERIGRALGREGPFAYTVEHKVD
GLSVNLYYEDGVLVWGATRGDGEVGEEVTQNLLTIPTIPRRLKGVPERLEVRGEVYMPIE
AFLRLNEELEEKGEKVFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEESGLQTQ
YELLLWLKEKGFPVEHGFTRALGAEGVEEVYQDWLKKRRALPFEADGVVAKLDDLSLWRE
LGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFIEGSEVSRVTLH
NESYIEELDIRIGDWVLVHKAGGVIPEVIRVLKERRTGEERPIVWPETCPECGFHLVKEG
KVHRCPNPLCPAKRFEAIRHYASRKAMDIQGLGEKLIEKLLEKGLVKDVADLYRLRKEDL
LGLERMGEKSAENLLRQIEASKHRGLERLLYALGLPGVGEVLARNLAARFQSMDRLLEAS
LEELLQVEGVGELTARAILETLKDPAFRDLVRRLKEAGVEMEAKEKGGEALKGLTFVITG
ELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARSLGVPTLTEEELYRL
LEARTGKKVEELV
NT seq 2022 nt   +upstreamnt  +downstreamnt
atgaccctggaagaggcgaggaagcgggtgaacgagctcagggatctcatccgctaccac
aactaccgctactacgtcctggcggaccccgagatctccgacgccgagtacgaccggctc
tttagggagcttaaggagcttgaggagcgcttccccgagcttaaaagcccggactccccc
acggagcaggtgggggcaaggcctttggagtccaccttccgccccatccgccaccccacc
cgcatgtattccctggacaacgccttcagcttcgaggagctcaaggcctttgaggagcgg
attgggcgggccttggggcgggaaggcccctttgcctacaccgtggagcacaaggtggat
ggcctctcggtgaacctttactacgaggacggggtcctggtctggggggccacccggggg
gacggggaggtgggggaggaggtgacgcaaaacctcctcaccattcccaccatcccgagg
aggctcaaaggggtgccggagcgcctcgaggtccggggcgaggtctacatgcccatagag
gccttcctccgcctcaacgaggagctggaggaaaagggggagaaggtcttcaaaaacccc
aggaacgcggcggcgggctccctacggcagaaggacccccgcatcaccgccaagcggggc
ctaagggccaccttttacgcccttgggcttgggctggaggaaagcgggcttcaaacccag
tacgagcttctcctttggctcaaggagaagggttttcccgtagagcacggctttacccgg
gccttgggggcggaaggggtggaagaggtctaccaggactggctgaagaagcggcgagcg
cttccctttgaggcggacggggtggtggcgaagctggatgatctttccctttggcgggag
ctcggctacaccgcccgcgccccccgcttcgccatcgcctacaagttccctgccgaggag
aaggagacgaggcttttggacgtggtcttccaggtggggcgcaccgggcgggtgaccccg
gtggggatcctggagcctgttttcattgagggaagcgaggtttcccgggttaccctgcac
aacgagagctacatagaggagctagacatccgcatcggggactgggttttggtgcacaag
gcgggcggggtcatccccgaggtcatccgggtcctcaaggagaggcgcaccggggaggag
cgccccatcgtttggcccgagacctgccccgagtgcggcttccacctggttaaggagggg
aaggttcaccgctgccccaaccccctttgccccgccaagcgctttgaggccatccggcac
tacgcctcccgcaaggccatggacatccagggcctgggggagaagctcattgagaagctt
ttggaaaagggcctggtcaaggacgtggccgacctctaccgcttgagaaaagaggacctc
ttgggcctggagcgcatgggggagaagagcgcagagaacctcctccgccagatagaggcg
agcaagcaccggggcctagagcgccttctttacgccttggggcttcccggggtgggggag
gttttggcccggaacctggcggcccgcttccagagcatggaccgtctcctagaagcctcc
ttggaggagcttttgcaggtggagggggtgggggagctcacggcgagggccatcctggag
accctaaaggaccccgccttccgcgacctggtgcggaggcttaaggaggcaggggtggag
atggaggccaaggagaaggggggcgaggccctcaaagggctcaccttcgtcatcaccggg
gagctttcccgcccccgggaagaggtgaaggccctcctgaggcgccttggggccaaggtg
acggactccgtgagccggaagacgagctacctggtggtgggggaaaacccggggagcaag
ctggaaaaggcacgctccctcggggtccctaccctgacggaggaggaactctaccgcctc
ctggaggcgcggacagggaagaaggtggaggagctcgtttaa

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