Thermus parvatiensis: AV541_05275
Help
Entry
AV541_05275 CDS
T04274
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpar
Thermus parvatiensis
Pathway
tpar03030
DNA replication
tpar03410
Base excision repair
tpar03420
Nucleotide excision repair
tpar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AV541_05275
03410 Base excision repair
AV541_05275
03420 Nucleotide excision repair
AV541_05275
03430 Mismatch repair
AV541_05275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpar03032
]
AV541_05275
03400 DNA repair and recombination proteins [BR:
tpar03400
]
AV541_05275
Enzymes [BR:
tpar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AV541_05275
DNA replication proteins [BR:
tpar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AV541_05275
DNA repair and recombination proteins [BR:
tpar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AV541_05275
NER (nucleotide excision repair)
GGR (global genome repair) factors
AV541_05275
MMR (mismatch excision repair)
DNA ligase
AV541_05275
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AV541_05275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
RNA_pol_A_CTD
AphA_like
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AMA75570
UniProt:
A0A0X8D903
LinkDB
All DBs
Position
945453..947474
Genome browser
AA seq
673 aa
AA seq
DB search
MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLFRELKELEERFPELKSPDSP
TEQVGARPLESTFRPIRHPTRMYSLDNAFSFEELKAFEERIGRALGREGPFAYTVEHKVD
GLSVNLYYEDGVLVWGATRGDGEVGEEVTQNLLTIPTIPRRLKGVPERLEVRGEVYMPIE
AFLRLNEELEEKGEKVFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEESGLQTQ
YELLLWLKEKGFPVEHGFTRALGAEGVEEVYQDWLKKRRALPFEADGVVAKLDDLSLWRE
LGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFIEGSEVSRVTLH
NESYIEELDIRIGDWVLVHKAGGVIPEVIRVLKERRTGEERPIVWPETCPECGFHLVKEG
KVHRCPNPLCPAKRFEAIRHYASRKAMDIQGLGEKLIEKLLEKGLVKDVADLYRLRKEDL
LGLERMGEKSAENLLRQIEASKHRGLERLLYALGLPGVGEVLARNLAARFQSMDRLLEAS
LEELLQVEGVGELTARAILETLKDPAFRDLVRRLKEAGVEMEAKEKGGEALKGLTFVITG
ELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARSLGVPTLTEEELYRL
LEARTGKKVEELV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaccctggaagaggcgaggaagcgggtgaacgagctcagggatctcatccgctaccac
aactaccgctactacgtcctggcggaccccgagatctccgacgccgagtacgaccggctc
tttagggagcttaaggagcttgaggagcgcttccccgagcttaaaagcccggactccccc
acggagcaggtgggggcaaggcctttggagtccaccttccgccccatccgccaccccacc
cgcatgtattccctggacaacgccttcagcttcgaggagctcaaggcctttgaggagcgg
attgggcgggccttggggcgggaaggcccctttgcctacaccgtggagcacaaggtggat
ggcctctcggtgaacctttactacgaggacggggtcctggtctggggggccacccggggg
gacggggaggtgggggaggaggtgacgcaaaacctcctcaccattcccaccatcccgagg
aggctcaaaggggtgccggagcgcctcgaggtccggggcgaggtctacatgcccatagag
gccttcctccgcctcaacgaggagctggaggaaaagggggagaaggtcttcaaaaacccc
aggaacgcggcggcgggctccctacggcagaaggacccccgcatcaccgccaagcggggc
ctaagggccaccttttacgcccttgggcttgggctggaggaaagcgggcttcaaacccag
tacgagcttctcctttggctcaaggagaagggttttcccgtagagcacggctttacccgg
gccttgggggcggaaggggtggaagaggtctaccaggactggctgaagaagcggcgagcg
cttccctttgaggcggacggggtggtggcgaagctggatgatctttccctttggcgggag
ctcggctacaccgcccgcgccccccgcttcgccatcgcctacaagttccctgccgaggag
aaggagacgaggcttttggacgtggtcttccaggtggggcgcaccgggcgggtgaccccg
gtggggatcctggagcctgttttcattgagggaagcgaggtttcccgggttaccctgcac
aacgagagctacatagaggagctagacatccgcatcggggactgggttttggtgcacaag
gcgggcggggtcatccccgaggtcatccgggtcctcaaggagaggcgcaccggggaggag
cgccccatcgtttggcccgagacctgccccgagtgcggcttccacctggttaaggagggg
aaggttcaccgctgccccaaccccctttgccccgccaagcgctttgaggccatccggcac
tacgcctcccgcaaggccatggacatccagggcctgggggagaagctcattgagaagctt
ttggaaaagggcctggtcaaggacgtggccgacctctaccgcttgagaaaagaggacctc
ttgggcctggagcgcatgggggagaagagcgcagagaacctcctccgccagatagaggcg
agcaagcaccggggcctagagcgccttctttacgccttggggcttcccggggtgggggag
gttttggcccggaacctggcggcccgcttccagagcatggaccgtctcctagaagcctcc
ttggaggagcttttgcaggtggagggggtgggggagctcacggcgagggccatcctggag
accctaaaggaccccgccttccgcgacctggtgcggaggcttaaggaggcaggggtggag
atggaggccaaggagaaggggggcgaggccctcaaagggctcaccttcgtcatcaccggg
gagctttcccgcccccgggaagaggtgaaggccctcctgaggcgccttggggccaaggtg
acggactccgtgagccggaagacgagctacctggtggtgggggaaaacccggggagcaag
ctggaaaaggcacgctccctcggggtccctaccctgacggaggaggaactctaccgcctc
ctggaggcgcggacagggaagaaggtggaggagctcgtttaa
DBGET
integrated database retrieval system