KEGG   Treponema pallidum subsp. pallidum Chicago: TPChic_0669
Entry
TPChic_0669       CDS       T01868                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
tph  Treponema pallidum subsp. pallidum Chicago
Pathway
tph03030  DNA replication
tph03430  Mismatch repair
tph03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TPChic_0669
   03430 Mismatch repair
    TPChic_0669
   03440 Homologous recombination
    TPChic_0669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tph03032]
    TPChic_0669
   03400 DNA repair and recombination proteins [BR:tph03400]
    TPChic_0669
Enzymes [BR:tph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     TPChic_0669
DNA replication proteins [BR:tph03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     TPChic_0669
DNA repair and recombination proteins [BR:tph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     TPChic_0669
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ADD72770
LinkDB
Position
complement(731857..735369)
AA seq 1170 aa
MARMSFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAE
GIKAIIGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGMYYK
PRVDDELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQD
HGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRLK
FKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKEH
YIRHLVHRGLYDRYAVVSEEIKARADYELDVIVRMDFVGYFLIVWDFITWAKEHDIPVGP
GRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDIDFCFERRQEVIEYVRA
RYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPDDPKLTFKKAYESEQL
AQMKQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDYVPLYKDSKTGKISTQFG
MDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSISDISDQDPTTFSMLAEGK
SAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFIDQYIESKRDPGKIKYPDP
CLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMGKKKLAVMQEKKKEFAERA
EKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAFLKANFPAEFMAANLSNEI
NSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYGLLGIKGLGEQVAFDVFDE
RIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVTRASLTAHLDDAMKYVARK
KAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKELMGYYISGHPLDEYRSVI
GEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKNMAFGSFEDLHGSVDIVVFPVL
WEEHRAQFLPETIMGLVGTVDFSKETPAFLVDSVIDLEQLRFAQVKTILAGSEHRRVSSG
EKTPLQKRGVSQEVHIEVSSHVRAHAQFKSLYEILSAHTGGSGEVFLHMHVDDRTYVVYV
PSCKVSATEVFAQQLKGNESFVQILKECVQ
NT seq 3513 nt   +upstreamnt  +downstreamnt
atggcgcgcatgtcttttgttcatttgcatgttcactcaaattattcactgttggatgga
gcttcttcattgcagcggctagtgcgtactgcaaagtcgctgggacaagaagcgcttgcg
cttaccgaccatgggaatatgtttggtgcgttgcattttcaaaaagtttgttctgctgag
ggtatcaaagcgattatcggatgtgagctctacgtggcacccgaaagtcgctttgatcgc
agtgagcatactatcggtcgcagatactatcacctcatcgtgcttgctaagaatgagacg
ggatatcgaaatctaatggttctatcctccaaagcctatatcgagggtatgtactacaaa
ccacgtgtggatgacgagcttctggcccagcatgcagaagggctcatttgtctttcttct
tgtcttgccggacagcttccttatctgttattgcagggcagaaaaagggaggcagaagaa
cacgcgcgcaaataccgagcgctcttcggtgtagataattactttattgaggtgcaagat
catggacttgatgaagagaagaaagtagcaccgcttttgattgagcttgcatgtaggctc
ggcattccgttggtggttacaaacgacgtgcattatgcggagcaggaagactctgttgca
caagacattctgctgtgcattggaacgaagaagaatcgctccgatcccaatcggcttaaa
tttaaaacagacgagttctatttaaagtcttctgaaaaaatggctcagctgtttccccac
tatcctgaaatggtgctgaatacggtgcgcattgcacagagatgtaatgtgcggattcct
cagcctggcccgctgcttccgctctaccagattcctcatgagttttccagcaaggaacac
tatattcgccatctggtccatcgaggtttgtatgatcgctatgcagtagtgagcgaagaa
attaaggcgcgtgctgattatgaactagatgttatcgtgaggatggattttgttggctac
tttttgatcgtgtgggattttattacgtgggcaaaggagcatgatattcctgttggtccg
gggcgggggtctggagcaagttctattgttgcatatgcgttaaaaattaccgacatcgat
ccccttagatataagttgctttttgaaagatttatgaatcctgagcgtatttctatgccc
gattttgacatcgacttttgttttgagcgcagacaagaagtgattgagtatgtgcgtgcg
agatatggaaatgacaatgttgggcaaattattacgttcggaacacttaagccaaaggcg
gcgattcgtgatgtagggcgcgtgttggatattccgctttcggaagttttgatgattaca
aaactgatgcctgatgatccaaaactgacttttaaaaaagcgtatgaatctgaacaatta
gcgcaaatgaagcaggagccgcgctatgctgaattgtttcaaatagcagaaaagcttgaa
gacaccaatcgaaacactagtttgcatgcagcaggtatcgttattggtaaaacggcgctc
actgattatgtaccgctctacaaggattctaagacgggaaaaattagtacccagtttggt
atggatttaattgaagactgtggattagtgaagatggactttcttgggctaaaaacactt
acgctcatccaacggacgcagaatctcgtacgacgtaaagggggtaagtacacaacgttt
tcgatatcggatatcagtgatcaggatcctacgactttttctatgttggcggaaggaaaa
tctgctgcagtgtttcagtttgaaagtcgcggtatgcaaggcatcctcaagcgtgcaaag
cccagtaagatggaggatctaatagcgttgaatgcattgtaccgacctgggccgatggca
ttcattgatcaatatattgaatcgaaacgtgatcctgggaaaataaaataccctgatccg
tgtttggaagacatcctttcagaaacatatggggtaatagtataccaagagcaggttatg
caggtggcacagcgcattgcaggtttctcgctgggagaagcagatattctgcgccgtgcg
atgggaaagaaaaagcttgcagtgatgcaggaaaagaaaaaggagtttgctgagcgtgca
gagaaacagggttttgataaaaagcatgctgagaatatttttgaaattcttattcctttt
gcagggtatgggtttaataaaagtcacgccactgcatattcagtggttgcctatcaaact
gcatttctaaaagcaaattttcccgccgagtttatggctgcgaacctttcaaacgaaatt
aattctgcagaaaaattaccactctacatggctgaagcagaaaagatgggtctgtccatt
cagaaaccggatgtcaatgcttctgaaccttattttagtgtttgtgaagggtgcattgtg
tatgggttgttgggtattaaaggtttgggtgagcaggttgcgtttgacgtttttgatgag
cgtattcgcaacggtccttacacctcctttgtagaggtgctggatcgagttcctgcaacc
tcgttaaataaaaaaaatgccgaaataatgattaaggctggatgttttgaccggttcggg
gtaactcgcgcaagtcttacagcgcacctcgacgatgcaatgaaatatgttgcgcgaaaa
aaggcggttacaagttctagacaagcaagcctttttgacgaaacggatttaggagaatgt
tctgaatacacctttccggttatggaagaatggtcccagagggagagactccgtatagag
aaggaactgatggggtattatatttctggtcatcctcttgatgaatatcgaagtgtgata
ggagaaaaggcgacattggatttaggacatattgaaaatgctcgttctgaaaataaatac
ctgattgtgggagtgctgaatgctattcacccgtatacaactaagtcaggaaagaatatg
gcttttggctcttttgaggatctccatggctctgtagacatagttgtgtttcctgtgctg
tgggaggagcatcgcgcgcagttcttgccagaaactattatggggttggtgggaactgta
gacttttctaaagaaaccccggcgttcttggtagattctgtcattgacttggaacaatta
cggtttgctcaggttaaaactattctggctggatcggagcataggcgtgtatcgtcagga
gagaaaactccactgcagaaacgtggcgtttcgcaggaagtgcacatcgaggtgagttct
cacgttcgtgcgcatgcacagtttaaatcgttgtatgagattttgagtgcacatacagga
ggctcgggtgaagtgtttcttcacatgcatgtggatgaccgtacgtacgtggtgtacgtt
ccttcgtgtaaggtatctgccactgaggtatttgcgcagcaattaaaaggtaatgagagt
tttgtccaaattctaaaggagtgcgtgcaatga

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