Treponema pallidum subsp. pertenue SamoaD: TPESAMD_0111
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Entry
TPESAMD_0111 CDS
T01751
Symbol
rpoN
Name
(GenBank) DNA-directed RNA polymerase sigma subunit RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
tpm
Treponema pallidum subsp. pertenue SamoaD
Pathway
tpm02020
Two-component system
tpm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tpm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TPESAMD_0111 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TPESAMD_0111 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpm03021
]
TPESAMD_0111 (rpoN)
Transcription machinery [BR:
tpm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TPESAMD_0111 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_IclR
HTH_Tnp_ISL3
HTH_24
HTH_Crp_2
HTH_3
KdpC
HTH_26
Alkyl_sulf_dimr
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AEZ57230
LinkDB
All DBs
Position
126608..128098
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AA seq
496 aa
AA seq
DB search
MSVSLLFCIPFVGLVCRARGDMQQLVQQQRLVLNQRLVHGLCLLQLSRGDLKTEVLRAVQ
RNPLLEIRPSSARRTGKACYLSLGDRRERMRARDRFQQLLENQPDKQVDNIRAVLREQVF
YQKHEAIVLDLACAFIQMLDDHGFFSISPAIFQNMCGSMPTALQEKIPQAIALIQRLEPQ
GCAVFNFKESLAVQARLRFERFSDPLYRCVINLLTHHSELLFCSDNMCDGRVSVHALTTQ
INSMGLCVQKVSSNDVKDILLLIKELHPFPGKCVSNAQRADTNMLLEPDVLITKTAHGFV
TQINCTGIPTVVFRNDYCMHSKAAEKNHALKACMHDALSLVSMLSYRERTLLDIAKTIVH
YQCGFFDHGPAKLTPLRMTDVAHRTGLSVSTVSRIVRDKWLQYGSQHFSLRYFFSPRVLS
TEEYRDRSSLGQNYPSSPHSKVSVKHRISRLIQEVRTQRISLSDRRIAQLLGEQGIKCAR
RTVNKYRSELRTCSSS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtttcgctccttttctgtattcctttcgtgggattggtttgcagggcacgtggt
gatatgcagcagcttgttcaacagcagcggttagttctcaatcagcggttggtgcacggg
ctttgtttactgcagctttctcggggggatttgaagaccgaggttctccgtgccgtgcaa
cgcaatccccttttagaaatacgtccttcgtccgctcgtcgcactgggaaggcttgttac
ctgtcgctcggtgatagacgtgagcgcatgcgcgcacgtgatcgctttcagcaattgctg
gaaaatcagcccgataagcaggttgacaatatccgagctgtattgcgtgaacaagttttt
tatcaaaaacacgaagcgattgtgctcgatttggcgtgcgcgtttatccagatgttagat
gatcacggttttttttccatatctcctgcgatctttcagaacatgtgtggtagtatgccc
acagcccttcaagaaaaaataccgcaggcaatagcgctcattcaaagacttgagccacaa
gggtgtgctgtttttaattttaaagaatcattggcagtccaagcgcggctgcgctttgag
cgtttctctgatcccttgtatcgatgtgttatcaatctactaacacaccacagcgaattg
cttttctgctctgacaatatgtgtgatggacgcgtatccgtgcacgcgctgacgacacag
attaatagtatggggctttgtgtgcagaaggtttcgtcaaatgacgtgaaagatattttg
ctcctcattaaggaactacatccctttccaggtaagtgtgtgtcgaacgctcagcgggct
gacacgaacatgttgcttgaaccagatgtattgattacaaaaactgcgcacgggtttgtt
acacagattaactgcacgggcatcccaactgtggttttccgaaacgattactgcatgcat
tcaaaagcggcagaaaaaaaccacgcgttgaaagcatgcatgcacgacgcgctcagtctt
gtaagtatgctctcataccgggaacgtaccttgctggatatcgcgaaaacaatagttcac
taccaatgcggtttctttgatcacggacctgcgaagctcacgcccctgagaatgacagat
gttgcacacaggaccggattgagcgtttcaacagtgtcccgcatagtgcgcgacaaatgg
ctccagtacggatcgcaacacttttccttaaggtactttttctcccctcgggttttatcc
accgaagaatatcgtgatcggtccagtcttggacagaattacccgagttctccgcactca
aaagtatcagttaagcaccggatatcacgtctcatacaagaggtacgaacgcagcgtata
tccctttccgaccgaaggatagcccagttgctcggtgagcagggcatcaagtgcgcaaga
cgtaccgtaaataagtaccgatcagaattgcgcacttgttcttcttcttaa
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