Salipiger profundus: Ga0080559_TMP1282
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Entry
Ga0080559_TMP1282 CDS
T04656
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tpro
Salipiger profundus
Pathway
tpro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0080559_TMP1282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpro03019
]
Ga0080559_TMP1282
03400 DNA repair and recombination proteins [BR:
tpro03400
]
Ga0080559_TMP1282
Enzymes [BR:
tpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ga0080559_TMP1282
Messenger RNA biogenesis [BR:
tpro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ga0080559_TMP1282
DNA repair and recombination proteins [BR:
tpro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ga0080559_TMP1282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Rhodanese
ResIII
Motif
Other DBs
NCBI-ProteinID:
APX22078
UniProt:
A0A1U7D1U6
LinkDB
All DBs
Position
complement(772774..774828)
Genome browser
AA seq
684 aa
AA seq
DB search
MPRDHVPGEALLREVFGFDAFRPGQGEIVEAVAQGENVLAIMPTGGGKSLCYQLPALMRG
GVTVVISPLIALMRDQVRALREAGVAAGALTSGNTQEETDAVWDMLSEGTLKLLYLAPER
LASGGAQRMLSQAGVGLIAVDEAHCVSQWGHDFRPDYLRIGELRRSLGVPLAAFTATADQ
ETQDEIVQRLFDGETPQSFLRGFDRPNIHFAFRPKDSPRAQILRFAAARKGRSGIVYCGT
RAKTESLARALREDGHSACFYHGGMDPDDRRHVEERFATEDGLIVVATVAFGMGVDKPDI
RWVAHADLPKSIEAYYQEIGRAGRDGAPAETLTLYGADDIRLRRAQIDEGMAPPERRAAD
HGRLNALLGLAEALGCRRQQLLRYFGEEAEPCGNCDLCDSPPEVFDGTEAVRKALSAALR
TGENFGMGHLIDILTGNETDKVRQRGHDRLPTFGVGRDLKKGQWQAVFRQMMGHDLVRPD
PERHGALVMTDRALPILKGEDSIRLRRDVIDRAAERRPAVKTLVNEEDAPLMSALKAKRR
ALAETASLPAYMIFPDRTLIEMAETRPDSLDAMARISGVGAKKLERYGAEFLSVITGATE
EMHPSRRRLAGRGAGDVYDRLMAVQADLARGVDGTEKPLSCSASQLAKVAQISPDRPQDL
ERLLDERRFERFGRAFLDVLGQAD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgatcatgtgcccggtgaggcgctgctgagagaggttttcggcttcgacgcc
ttccgccccggccagggcgagatcgtcgaggccgtggcgcagggcgagaatgtcctcgcg
atcatgcccaccggcggcggcaagtcgctgtgctaccagctgccggcgctgatgcgcggc
ggcgtgacggtggtgatctcgccgctcatcgcactcatgcgtgaccaggtccgcgcgctg
cgcgaagccggggtcgcggccggggcgctgacctcgggcaacacccaggaagagaccgac
gcggtctgggacatgctctcggagggcacgctcaagctgctctacctcgcgccggaacgg
ttggcctcgggcggggcgcagcggatgttgagccaggcgggggtcggcctcatcgccgtc
gacgaggcgcattgcgtcagccagtgggggcatgatttccgccccgactacctgcgcatc
ggcgagctgcgccgcagtctcggggtgccgcttgcggccttcaccgccaccgccgaccag
gaaacgcaggacgagatcgtccagcgcctgttcgacggcgagacgccgcagagcttcctg
cgcggcttcgaccggccgaacatccatttcgcctttcgtcccaaggacagcccgcgcgcg
cagatcctgcgcttcgctgccgcccgcaagggccggtcgggcatcgtctactgcggcacc
cgggccaagaccgagagccttgcccgcgccctgcgcgaggacgggcacagcgcctgtttc
taccatggcggcatggacccggacgaccgccgccacgtcgaggagcgcttcgccaccgag
gacgggctgatcgtggtggccaccgttgccttcgggatgggggtcgacaagcccgacatc
cgctgggtcgcccacgccgacctgcccaagtcgatcgaggcctattaccaggagatcggc
cgcgccggccgcgacggcgcgccggccgaaacgctcacgctttacggcgccgatgacatc
cgcctgcgccgcgcccagatcgacgaggggatggcgccgcccgaacgccgcgccgccgac
cacggccggctcaacgcgctgctcggtcttgccgaggcgctgggatgtcggcgccagcag
ctcctgcgctacttcggcgaagaggcggagccctgcggcaactgcgatctctgcgacagc
ccgcccgaggtcttcgacggcaccgaggcggtgcgcaaggcgctgtcggcggcgctgcgc
acgggcgagaacttcggcatgggccacctgatcgacattctcaccggcaacgagaccgac
aaggtgcgccagcgcggccacgacaggttgcccaccttcggtgtcggccgcgacctcaag
aagggccagtggcaggcggtgttccggcaaatgatggggcacgacctcgtgcggcccgac
cccgagcgccacggcgcgctggtgatgaccgaccgcgcgttgccgatcctcaagggcgag
gacagcatccgcctgcgccgcgacgtgatcgaccgcgccgccgagcgccgcccggcggtc
aagacgctggtcaacgaggaagacgcgccgctgatgtccgcgctcaaggccaagcgccgg
gcgctggccgagacggcctcgctgcccgcctacatgatctttcccgaccgcacgctgatc
gagatggccgagacccgtcccgatagcctcgacgccatggcccgcatcagcggtgtcgga
gcgaagaagctcgaacgctatggcgccgagttcctttcggtcatcaccggcgccaccgaa
gagatgcacccctcgcggcgcaggctcgccgggcgcggcgcgggcgatgtctacgaccgg
ctgatggcggtgcaggcggatcttgcgcggggcgttgacggtaccgagaagccgctgtcc
tgctcggcctcgcagcttgccaaggtggcacagatctcgcccgaccggccacaggatctc
gagcggctgctcgacgagcgccgtttcgagcggttcggccgcgcctttctggacgttctc
ggacaggcggactag
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