Tatumella ptyseos: NCTC11468_00190
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Entry
NCTC11468_00190 CDS
T05493
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpty
Tatumella ptyseos
Pathway
tpty03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11468_00190 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpty03021
]
NCTC11468_00190 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpty03400
]
NCTC11468_00190 (rpoC)
Enzymes [BR:
tpty01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11468_00190 (rpoC)
Transcription machinery [BR:
tpty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11468_00190 (rpoC)
DNA repair and recombination proteins [BR:
tpty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11468_00190 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
SQK71808
UniProt:
A0A2X5NE54
LinkDB
All DBs
Position
1:152305..156525
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAVQALLKGMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LHLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEAMVLTGPKEAERVYRAG
LAELHARVKVRITEYSKNEQGEFIPHTSLVDTTVGRAILWMIVPKGLPYSIINQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMENLQTETVINRHGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGSADILVARNTLLDEHWCDVLEQNSVDSVKVRSVVGCTTDFGVCAHCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
INAKSVTNSAGKLVITSRNVELNMIDEFGRTKESYKVPYGSVMAKGDGEQANAGETVANW
DPHTMPVITEVNGYVRFVDMNDGQTITRQTDELTGLSSIVVMDTAERTSGGKDLRPALKV
VDANGDDVMLPGTDMPAQYFLPGNAIVQLEDGVKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIASSGSSEFLEGEQAEVSRVMIANRELEANGKVPATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRHAGEAPV
VPQVTADEASASLAELLNAGLGGNDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctaaaagcgcaaactaaaaccgaagagtttgatgcgatc
aagattgctctggcatcgccagacatgatccgttcctggtctttcggtgaagttaagaag
ccagaaaccattaactaccgtacctttaagccggaacgtgatggtctgttctgtgcgcgt
atttttggtccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggcgtagaagttacccagactaaagttcgtcgtgac
cgtatgggtcacatcgagctggcatctcctacagcacacatctggttcctgaaatcactg
ccatcccgtattggtctgttattagacatgccactgcgtgatatcgaacgtgtgctttat
ttcgaatcttatgtcgttattgaaggcggcatgaccaacctcgaaaagcgccagatcctg
actgaagagcagtatctggatgcgttagaagagtttggtgatgaattcgacgcaaaaatg
ggtgcggaagcggttcaggccctgctgaaaggcatggatctggaacaggaatgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
attaagctgcttgaagctttcgttcagtctggtaataaaccagagtggatgatcctgaca
gtactgccagtattgccaccggacctgcgtcctctggtaccgctggacggtggacgcttt
gcgacttcagatctgaatgatctgtatcgccgtgtgatcaaccgtaataaccgtctgaag
cgtcttctggatctggctgcgcctgatatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtcgatgctctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaagtctctggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactctggtcgttccgtcattaccgtaggtccttac
ctgcacctgcatcagtgtggtctgccgaagaaaatggcactggaactgttcaaaccattt
atctatggcaagctggaactgcgtggcctggcgacgactatcaaagccgctaagaaaatg
gttgagcgtgaagaagctgtcgtctgggatatcctggatgaagttatccgcgaacacccg
gttctgctgaaccgtgcaccaacactgcaccgtttaggtattcaggcgttcgaaccggta
ttgatcgaaggtaaagcgattcagctgcacccgttagtctgtgctgcttataacgccgac
ttcgatggtgaccagatggcggtacacgtaccgttgactctggaagctcagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtctcctgcgaatggtgagccaatcatc
gttccttctcaggacgttgtactgggtctgtattatatgacccgcgacaaagttaacgcc
aaaggtgaagccatggtgctgaccggacctaaagaagcggaacgtgtgtaccgcgcaggt
ctggctgagctccacgctcgtgtcaaagtgcgtattactgaatacagcaaaaacgagcag
ggcgaattcatcccacataccagcctggtcgacaccactgtcggtcgtgccattctgtgg
atgatcgtacctaagggtctgccgtactcgattatcaaccaggcactgggtaagaaagct
atctctaagatgctgaatacctgttaccgtatcctgggtctgaagccgaccgttatcttt
gctgaccagaccatgtataccggttttgcttatgcagcccgttcaggtgcatctgtaggt
atcgatgatatggttatcccggccaaaaaagccgagatcattaccgaagctgaagcggaa
gttgctgagattcaggaacagttccagtcaggtctggtgaccgccggtgaacgttacaac
aaagtcatcgatatctgggctgcggctaacgaacgtgtttccaaagcgatgatggaaaac
ctgcaaactgaaactgtgatcaaccgtcatggtgaagaagagcagcaggtttctttcaac
agcatctatatgatggccgactccggtgctcgtggttctgctgcgcagatccgtcagctg
gcaggtatgcgtggtctgatggctaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtacttcagtacttcatctcgacccacggtgctcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttatctgacgcgtcgtctg
gttgacgttgcacaggatctggtcgttaccgaagatgattgtggtacccacgaaggtatc
atgatgactccggtcatcgaaggcggtgatgttaaagagccactgcgtgaacgtgttctg
ggccgtgtaacggctgaagatgtactgaaacctggttctgcagatattctggtggcacgt
aataccctgctggatgagcactggtgtgacgttctggaacagaactctgtcgacagcgta
aaagtacgttcagtggtaggttgtacgactgactttggtgtgtgtgctcactgctatggt
cgtgacctggctcgtggacatatcatcaacaaaggtgaagctgtcggtgttatcgcagca
cagtccatcggtgagcctggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcccgtgcggctgctgaatccagcattcaggtgaagaacaaaggtaccatcaagctt
atcaacgcgaagtcagtaacaaactcagcaggcaagctggttattacttcacgtaacgtt
gaactgaatatgatcgatgaattcggtcgtaccaaggaaagctataaagtaccttatggt
tccgtgatggccaaaggtgatggtgagcaggcgaatgccggcgaaaccgttgctaactgg
gatccgcacaccatgccggtaatcaccgaagtgaacggttacgtacgctttgtcgatatg
aacgatggccagacaatcacccgtcagacggatgagctgaccggtctgtcttctatcgtg
gtgatggatactgctgaacgtacctccggtggtaaagatctgcgtccggcactgaaagtg
gtcgatgccaatggtgatgatgttatgttaccaggtaccgatatgccggctcagtacttc
ctgccaggtaacgcgattgtacagctggaagatggtgtaaaaatcagctccggtgatacc
ttagcgcgtgttcctcaggaatccggcggtactaaagatattaccggtggtctgccacgt
gttgctgacctgttcgaagcccgtcgtccgaaagagccggcgattctggcagaaatcagc
ggtattatttccttcgggaaagagaccaaaggtaaacgtcgcctggtgatcactccggtt
gacggtagcgaaccttacgaagagatgatcccgaaatggcgtcagctgaacgtatttgaa
ggtgagcgcgtagaacgtggtgatgtagtttccgatggacctgaatctccgcacgacatt
ctgcgtctgcgtggcgttcatgcggtgactcgttacatcgttaacgaagttcaggacgtt
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagcgaccattgcttcttccggaagctctgagttcctggaaggtgaacaggct
gaagtttcacgcgtgatgattgctaaccgtgaactggaagctaacggtaaagtccctgcg
actttcgcccgtgacctgctgggtattaccaaagcatctctggcaacagagtcgtttatc
tctgcagcatccttccaggagactacccgtgtcctgactgaggccgctgttgccggtaaa
cgtgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatccctgccggt
accggttatgcataccatcaggatcgtatgcgtcgccgtcacgcgggtgaggcaccggtg
gttcctcaggtgactgcagatgaagcctctgcaagcctggctgaactgctgaatgccggc
ctcggcggtaacgacgagtaa
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integrated database retrieval system
