KEGG   Thermocrinis ruber: THERU_02785Help
Entry
THERU_02785       CDS       T03001                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
trd  Thermocrinis ruber
Pathway
trd03030  DNA replication
trd03410  Base excision repair
trd03420  Nucleotide excision repair
trd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:trd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    THERU_02785
   03410 Base excision repair
    THERU_02785
   03420 Nucleotide excision repair
    THERU_02785
   03430 Mismatch repair
    THERU_02785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trd03032]
    THERU_02785
   03400 DNA repair and recombination proteins [BR:trd03400]
    THERU_02785
Enzymes [BR:trd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     THERU_02785
    6.5.1.6  DNA ligase (ATP or NAD+)
     THERU_02785
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     THERU_02785
DNA replication proteins [BR:trd03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    THERU_02785
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     THERU_02785
DNA repair and recombination proteins [BR:trd03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     THERU_02785
   NER (nucleotide excision repair)
    Other NER factors
     THERU_02785
   MMR (mismatch exicision repair)
    Other MMR factors
     THERU_02785
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AHE95784
UniProt: W0DBA4
LinkDB All DBs
Position
complement(507445..509163)
Genome map
AA seq 572 aa AA seqDB search
MKFLEVAQFFQKLEETTSRLEMSELLYELFSKADKEEIGKLVYLTMGELVPSFVGLEFGV
SEKLALEALSKAVGIRLAQIQQIYKRFGDVGMVAMEVIKREGRGLSLSQVYDELMAIARA
RGTLDKVMLLINLLKALSGIEAKFALRIIVGNLRLGVGTATIIEALALLLGSRSYKDLVE
RAYNLCSDLGLVARTLVEKGKDGLLEFKIEPGYPVRMALAERVADAEELIRRLGRCAIEA
KYDGFRLQVHKKGKEVYIYSRNLEPMTDMFPEIKSAIGELPIEKIILEGEALAVNEQTGE
FYPFQITIQRKRKYDVYEFAKEYPLKLFCFDLLYLEGEDYTVKPFIERRKKLEELIVPGN
TLELSELKIVDSAKEVEDFFEDAIVRGLEGIMGKRLDAPYTAGSRNFNWVKLKRSYKGQL
ADTLDLVIVGYFYGRGARSKLGIGALLTAVYDPSTDTFKTISKVGSGFTEEEWVRLKEML
DHIKLEHRHARVDSLITPDVWVEPRYVITVSADEITRSPLHTAGKVGDGPGYALRFPRAV
SFVRADKLPEDATTVEEVLRMFQMQRKVKIEE
NT seq 1719 nt NT seq  +upstreamnt  +downstreamnt
gtgaaattcttagaagttgcccaattctttcagaagcttgaggagaccaccagccggctt
gaaatgtccgagctactttatgagcttttttcaaaggctgataaagaagagattggaaag
cttgtctatctcactatgggagaattggtgccctcctttgtaggtttggagtttggagtt
tcggaaaagttagccctagaagccctttcaaaggcggtgggtattaggttagcccaaata
cagcagatctataaaagatttggtgatgtgggaatggttgctatggaggtcataaagagg
gaaggaagggggcttagcctttcgcaggtctatgatgagctgatggcaatagccagggca
aggggaaccttagataaggttatgcttcttataaaccttcttaaagcattatctggcatt
gaggcaaagtttgcactaaggatcattgtaggaaaccttcgtttgggagtgggcacagca
actatcatagaagcattggcattgctcttgggaagtaggtcttacaaagatttagtggaa
agggcatacaatctgtgctcggaccttggtcttgtggcccgcacactggtggaaaaagga
aaggatggacttttggagtttaagatagagcccggataccctgttcggatggctctggcg
gagagggttgcagatgcagaggagttaatcagaaggcttggaaggtgcgccatagaggca
aagtatgatggctttagactgcaagtccacaaaaagggtaaggaggtgtatatctattct
cgcaatctggagcccatgacggatatgtttcctgagataaagtctgccattggagaactt
ccgatagaaaaaattatcttagagggtgaggcgttggcggttaatgagcagacgggagag
ttctatccctttcagattaccattcaaagaaagagaaagtatgatgtttatgagtttgcc
aaggagtacccactaaagctcttttgctttgacctgctgtatttggaaggggaggactat
acggtcaagcccttcatagaaagaaggaaaaagttggaggagttaatagttcccggtaat
actctggagctttcggagctcaaaatcgtggactcggcaaaggaggtagaggatttcttt
gaggatgccatagttagaggacttgagggtattatgggcaaaaggcttgatgcgccatac
acagcaggttcaagaaactttaactgggtaaagctaaagaggagctataaaggacagttg
gcggacaccttggacctggtgatcgtgggctacttttacggaaggggtgcaaggagcaaa
cttggaataggtgctctgcttaccgcggtctatgacccttccacagacacctttaaaact
atctctaaggtaggctcgggtttcacagaagaagaatgggtcaggctaaaggaaatgtta
gaccacataaagttagaacacaggcacgcgagggttgattctcttataactcccgacgtg
tgggtagaaccaaggtatgttataaccgtctctgcggacgagatcacccgctcacctttg
catactgccgggaaggtaggcgatggtcccggatacgccctccgatttccaagggctgtt
agctttgtcagggcagacaaactgccagaggatgctaccacggtggaagaggtgctgaga
atgttccagatgcaaaggaaggttaagattgaggagtaa

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