KEGG   Trichoderma reesei: TRIREDRAFT_60873Help
Entry
TRIREDRAFT_60873  CDS       T02991                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tre  Trichoderma reesei
Pathway
tre03030  DNA replication
tre03410  Base excision repair
tre03420  Nucleotide excision repair
tre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TRIREDRAFT_60873
   03410 Base excision repair
    TRIREDRAFT_60873
   03420 Nucleotide excision repair
    TRIREDRAFT_60873
   03430 Mismatch repair
    TRIREDRAFT_60873
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tre03032]
    TRIREDRAFT_60873
   03400 DNA repair and recombination proteins [BR:tre03400]
    TRIREDRAFT_60873
Enzymes [BR:tre01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TRIREDRAFT_60873
    6.5.1.6  DNA ligase (ATP or NAD+)
     TRIREDRAFT_60873
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TRIREDRAFT_60873
DNA replication proteins [BR:tre03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    TRIREDRAFT_60873
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     TRIREDRAFT_60873
DNA repair and recombination proteins [BR:tre03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TRIREDRAFT_60873
   NER (nucleotide excision repair)
    Other NER factors
     TRIREDRAFT_60873
   MMR (mismatch excision repair)
    Other MMR factors
     TRIREDRAFT_60873
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase KNOX1
Motif
Other DBs
NCBI-GeneID: 18486694
NCBI-ProteinID: XP_006964936
JGI: Trire2_60873
UniProt: G0RI77
LinkDB All DBs
Position
Unknown
AA seq 881 aa AA seqDB search
MSSPAKARKLNSGKKQPAAQSKGLEYFFSKQKQPESPNPSTGEDGAPSSSSALLSDEELA
RKLQAEWNQEVASHRQTPSEGQSSTPKDSDVGAISKTEDGDSTPASVSNPEPPTADAALR
KQDNRKTLSLQSTGMVDDAVTNSIPLDESPLTFEPSKYVKLLQECWAAEKGDATYALLTR
CFVLVSATTSRIKIVDTLVNCLRILIEGDPSSLLPAVWLATNSISPPYISMELGLGGSAI
SKALRQVCGLDNRSLKAIYDKYGDPGDVAFEAKKKQSFTLRKPKPLTIKGVYQALVKIAT
THGQGSGEAKQRIVDRLLQDARGGEESRFIVRTVSQYLRIGAVKTTMLIALSRAFLLSKA
PGSEYSTKDVGELRKLKKEELADVWGKAEEIVKASFARHPNYNDLIPALLEIGVCEELLL
RCGLTLHIPLRPMLGSITRDLSEMLTKLQGRDFACEFKYDGQRAQVHCDDKGKVSIFSRH
LELMTEKYPDLVDLVPKIRGEGIGSFIMEGEVVALDRETGELKNFQTLTNRARKDVAIGD
IKIDVCLFAFDLMYLNGQSLLNRPFRERRELLRSLFTEVPHHFTWVKSLDATSGDSEAVL
DFFKSALENKCEGIMVKILDNIPDPPLAEAAEGDVEQPQPLEDTEKLSLPKTRSKGKAKP
KTSAKADGEEKATKSRRKPLLATYEPDKRLDSWLKVKKDYNSSFDTLDMIPVAGWHGQGR
KAKWWSPILMAVRNEESGMLEVVCKCISGFTDSFYKANKAFYDDGEESGEPKNTKLQKPS
FIEYHGPAPDVWFEPQEVWEMAFADITLSPVYTAAIGLVSDERGLSLRFPRFLKKRDDKS
IEEASTNEFLANLWRKQEAKAASTAKDEVEVEDAADVEEED
NT seq 2646 nt NT seq  +upstreamnt  +downstreamnt
atgtcgagtccggccaaggcgaggaagctcaacagtggcaagaagcagccggcagctcag
tccaagggacttgagtacttcttttccaagcagaaacagcccgaatcgccaaatccatca
actggcgaggatggcgcgccgagcagctcttccgctctgctctcagacgaggaactggca
cgcaagctacaggcagaatggaatcaagaggtagcaagtcaccgccagactccctctgaa
ggccaaagctcaacgcccaaggactcagacgtcggagccatctcaaagacggaagacggc
gactccacgcctgcttctgtcagcaacccggagccaccaactgccgatgcagctctgagg
aagcaagacaacaggaagacgctgtctctgcaatctaccgggatggttgatgacgcagtc
acaaactccattcctcttgacgagtctcctctcacctttgaaccgtcaaagtacgtaaaa
ctactacaagagtgctgggctgccgaaaagggcgacgctacatatgctctccttaccaga
tgctttgtccttgttagcgcaacgacaagccgcatcaagattgttgatacccttgtgaac
tgcctgcgaatcttgatcgaaggcgatccctctagcctcttaccagcggtctggcttgcc
acaaactccatatcgcctccatacatttccatggagcttgggctcggtggctctgccata
tccaaggcacttcgccaagtctgcggccttgataaccggtctctcaaggccatctatgac
aagtacggggacccgggcgatgttgctttcgaagccaagaagaaacagagcttcacgttg
agaaaaccaaagccgctcaccatcaagggtgtctatcaggccttggttaagattgccact
acacatgggcagggaagtggcgaggccaagcagcggatcgtcgatcggctattgcaagat
gcgcgaggaggagaggaaagccggtttattgttcgaacggtctcgcaatatcttcgcatt
ggtgccgtgaagactactatgcttatcgcgttgtcaagggcgttcctgctgtccaaggcc
cctggctctgaatacagcacaaaggatgtcggggaactgcgtaagctgaagaaggaagag
ttggcagacgtatggggcaaggcggaagagattgtcaaagccagctttgcgagacacccc
aactacaacgacctcatccctgcactcctcgagattggggtatgcgaggagctgcttctg
cgatgcggcttgactctccacattccactgcgtcccatgttggggagcataaccagagac
ctctcagagatgctgacgaagctccaggggagagactttgcatgcgagttcaagtatgac
gggcagcgcgcacaagtccactgcgacgacaaaggcaaagtgtccatcttctccagacat
ttggagctcatgacggaaaagtaccccgacctggtggaccttgtgcccaagattagagga
gagggcatcggaagcttcatcatggagggagaagtggtggctcttgatcgagagacgggc
gagctgaagaatttccagacattgacgaatcgtgcgcgaaaggatgtggcgattggagac
atcaaaatcgacgtgtgtcttttcgcgtttgacctcatgtacctcaacgggcaatctctc
ttgaaccgaccctttcgagaacggcgagagcttcttcgatcgctcttcaccgaggtgccg
catcactttacctgggtcaagagcctggatgctacgtctggagactccgaagcagttctt
gacttcttcaagtcggcgttggagaacaaatgcgaaggcatcatggtaaagatcttggac
aacatacccgacccacctttggcggaggcggcggagggcgatgttgagcagccgcagccc
ctggaagacacggagaaactgtcactaccaaagactcgatcaaagggcaaggcgaagccg
aaaacttctgcaaaggccgacggtgaagagaaagcaacaaaatctcgaaggaagccgctc
ttagcgacttacgaaccagataagcggcttgattcctggctcaaggtgaagaaggactat
aactcgagtttcgacacattggacatgattcccgttgctggatggcatgggcagggccga
aaggccaagtggtggtctcccatcctgatggcggtgcggaacgaggaaagcggtatgctc
gaggtggtgtgcaaatgcatctcgggctttacagactcattctacaaggcgaacaaggcg
ttttatgacgacggcgaagagagcggagagcccaaaaacaccaagctgcagaagccgagt
tttatagaataccacggtccggctccggatgtttggttcgagccgcaggaggtgtgggaa
atggcgtttgcggacattacgctcagcccggtgtatacggctgccattgggcttgtgagc
gacgagcgaggcctgagtttgcggtttccgcggtttttgaagaagagagacgacaagagc
attgaagaagccagtacgaatgagtttcttgctaatctatggaggaagcaggaagctaag
gcggcgtcaacggcaaaggatgaggttgaggtggaggatgctgcagatgttgaggaagag
gattga

DBGET integrated database retrieval system