KEGG   Takifugu rubripes (torafugu): 101068311Help
Entry
101068311         CDS       T02386                                 

Gene name
lig3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
tru  Takifugu rubripes (torafugu)
Pathway
tru03410  Base excision repair
Module
tru_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:tru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    101068311 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tru03400]
    101068311 (lig3)
Enzymes [BR:tru01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101068311 (lig3)
DNA repair and recombination proteins [BR:tru03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     101068311 (lig3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C RNA_ligase BRCT_2 mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 101068311
NCBI-ProteinID: XP_011609533
LinkDB All DBs
Position
15
AA seq 998 aa AA seqDB search
MQRVLIFGAYKSISVCLQPFKTHVRCPHIWKGFSAVRPLNLPSQIYHFYPASGTPRLLRD
IDTPPRQDFSSQADMAEQRFLVEYAKRGTAGCKKCKDKIVKGIVRIGKIVPNPFSESAGE
MKEWYHVKCIFEKLERARATTKKIEDLTELEGWEDLQDEDKDLINKHVSDLMAKVNASPK
KKVQAKLNTSGHLMAPPADPSINAPRKFSGFTAAKAGTSTSSSTSSSTSSPVSSSSPARV
QGSSLSSQFSDPQHKDCLFREFRKLCGTVAENNSYNAKTQIIENFLRKGTGGDKFHGDLY
LTVKLLLPGVVKSVYNLNDKQIVKLFSRIFGSNQDEMVRDLEQGDVSETVRVFFESSKSF
PPASKSLLTIQEVDASLTRLAQLTKEDEQQTELEFIAKKCTSNDLKCIIRLVKHDLKMNS
GAKHVLDAVDPNAYDAFKASRNLGDVIDRVLKNQQEASNGSGPRKLLTVEASLMTPVQPM
LAEACKSVEYAMKKCPNGMYSEIKYDGERVQVHKNGDNFSYFSRSLKPVLPHKVAHFKDY
IPQAFPGGHSMILDAEVLLIDTQTSKPLPFGTLGIHKKAAFQDAKVCLFVFDCIYFNGTS
LMERPLCERRKFLHDNMVEVPNRILFSEMKHVTRAADLADMITRVIREGLEGLVLKDVKG
MYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWC
TVTKCSGGYDDAMLARLQKELDVVKISKEPSKIPNWLKIVKNYYPDFIIRNPEEAPVWEI
TGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLNQLKELYRISKENSAFKVTAGP
SDNDKPSSGDSGGNSPPASSRGGATPKKRASEGPSKPKAVKSQPRTPGPKAPSAKKVKKS
ETVHSNGKSIEVKRAEPKKDQTLLDIFNGVKLFLPLSIQDFDKLKRYFVAYNGDLVPDYD
AATATHTMAEPDEDSGAQKVTPGWIWECIRKRRVVPPC
NT seq 2997 nt NT seq  +upstreamnt  +downstreamnt
atgcagagggttcttatttttggagcttataaatccatcagtgtatgtttacaaccgttt
aaaacgcatgtcaggtgtccgcacatctggaaaggcttttccgctgtccgtccattaaat
ttaccctcacagatctatcatttctacccggcctccggcactcccagactcctccgggac
attgacactcccccccgtcaggatttctccagccaggcagacatggcggagcagaggttc
ctcgtggagtacgccaagcgcggcactgcgggatgcaagaaatgcaaggacaaaatcgtg
aagggcatagtgcgcataggaaagatcgttcccaaccctttcagtgagtctgcgggggag
atgaaagagtggtaccatgtcaaatgcatttttgagaagctggaaagagccagagccacc
acaaagaagatcgaagacctgactgagctggagggctgggaggacctccaggatgaggac
aaagacctcattaacaagcacgtttcagacctgatggcaaaagtcaacgccagtccaaag
aagaaggtccaggccaagctcaacaccagcggccatctgatggctcctcccgccgacccc
tccattaacgcccctcgcaagttctcaggcttcaccgctgcgaaggcgggcacctccacc
tccagctccacctccagctccacctccagccctgtgtcctcgtcctctcctgccagagtc
cagggcagcagcctgtccagccagttctctgacccccagcacaaagactgcctcttcaga
gagttccgcaaactctgcggcacggtggccgaaaacaacagctacaacgccaaaacgcag
atcatcgagaacttcctgaggaagggcaccggtggagacaagttccacggagatctttac
ttgacggtcaagctgctcctgcccggcgtcgtcaaaagtgtttacaacctgaacgacaag
caaatcgtgaagctcttcagccgcatattcggaagtaaccaggatgagatggtgcgcgac
ctggagcagggtgacgtgtcggagactgtccgggtgttcttcgagagcagtaaatccttc
cctccggcctccaagagccttctgaccatccaggaggtggacgcctcactgacccgcctc
gctcagctgaccaaggaggacgagcagcagaccgagctggagtttatcgccaaaaaatgc
acctctaacgacctgaaatgcataattcgactggtcaaacatgacctgaagatgaactcc
ggagccaaacacgtgttggacgcggtggatcccaacgcttacgatgccttcaaagcttcc
cgaaatctgggcgatgtgatcgaccgtgtgctgaagaatcagcaggaggcctcaaacgga
tcagggcccaggaaactcctcactgtggaagcttcactcatgacgcccgtccagccgatg
ttggccgaagcttgtaaatctgttgaatatgccatgaagaagtgccccaacgggatgtac
tcggagatcaaatatgacggggaacgagttcaggtccacaagaacggagacaacttcagt
tacttcagccgcagcctgaagccagtgctgccacacaaagtggcccacttcaaggactac
atcccgcaggcgttcccaggaggtcacagtatgatcctggacgctgaggtcctgctgatc
gacactcagaccagtaaacctctgccctttggaactctgggcattcacaagaaagcagcc
tttcaggacgccaaagtttgcctttttgtattcgactgtatttacttcaatggcacaagt
ctcatggagaggccactgtgcgaacgcaggaagttcctgcacgacaacatggttgaagtt
cccaacaggatcttgttctcagagatgaagcatgtgacgagggcagctgatctggccgac
atgatcacccgggtcatcagggaaggactggaaggactggtgttgaaggatgttaagggc
atgtatgaaccagggaaacgacactggctgaaggtcaagaaggactacttaaatgagggc
gcaatggccgacacggccgacctggtggtgctcggcgccttctacggaaaaggctccaat
gggggcatcatgtccagtttcctgatgggatgttatgaccccgactctaagaaatggtgc
accgtcaccaagtgttccggaggctacgatgacgccatgttggctcgccttcagaaggag
ctggatgtggtcaaaatcagcaaggagccgagcaaaatcccaaactggctgaaaattgtc
aagaattattacccagatttcattatccgtaatcctgaggaggctccggtgtgggagatc
accggagcagagttctccaaatctgagatgcacacagctgacgggatatccatccgtttc
ccccgaatgacccgtatccgtgacgacaaggactggaagactgccaccaacctgaaccag
ctcaaggaactttaccgcatatccaaagagaactccgccttcaaggtgacggctgggccg
tctgacaatgacaaaccctcatcaggagacagcggaggaaactcgccgcccgcctcctcc
cgaggtggcgccacacccaagaaaagagccagtgaaggtccttcaaaaccaaaggcggtg
aaatctcagcctcgcactcccggccccaaggctccgagcgctaaaaaggtgaaaaagagt
gaaactgtccacagtaatgggaaatcaattgaggtgaagagggcggagccaaagaaagat
cagacgctgctggacatcttcaatggagtgaagctgttcctcccactgtcgattcaggac
tttgacaaactcaagcgctacttcgtagcgtacaacggcgacctggtgccagactacgac
gccgccacggccacgcacaccatggccgagcctgatgaggacagcggggctcagaaggtg
acgcccggctggatctgggaatgcatccggaagaggcgcgtcgtcccaccctgctga

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