Takifugu rubripes (torafugu): 101070597
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Entry
101070597 CDS
T02386
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04510
Focal adhesion
tru04512
ECM-receptor interaction
tru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101070597 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101070597 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101070597 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101070597 (col1a2)
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101070597 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
101070597
NCBI-ProteinID:
XP_011607785
Ensembl:
ENSTRUG00000015407
LinkDB
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Position
12:complement(10968104..10981911)
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AA seq
1349 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQYAGLKGPRGDRGPPGPDGKDGKPGLPGPAGPPGPPGL
GGNFAAQYDGVKAPDPGPGPMGLMGPRGPPGPPGPPGPQGHTGHPGEPGEPGQSGPLGPR
GPPGPPGKSGEDGNNGRPGKPGDRGTPGPQGARGFPGTPGLPGMKGHRGYPGLDGRKGES
GGAGLKGETGARGAAGSPGQAGARGSSGERGRAGPAGAPGARGADGNVGPAGAAGPAGAS
GPPGFPGGPGPKGEVGPAGANGPSGAQGPRGEPGPNGAVGPVGPAGNPGANGLNGAKGAA
GTPGIAGAPGFPGPRGGPGPQGPQGAVGQRGLAGDPGVQGIKGDAGGKGEPGNAGPPGPP
GSQGEEGKRGPGGEPGASGPAGLRGARGGPGSRGMPGGDGRAGPVGMPGARGATGAAGPR
GPPGDAGRNGEPGPAGARGLPGSPGNSGPPGKEGPAGAAGQDGRTGPPGPTGPRGQPGNI
GFPGPKGVAGEPGKPGDKGATGPTGLRGAPGPDGNNGATGAVGPAGGPGEKGEQGPSGAT
GFQGQPGPAGSVGEGGKPGDRGIPGDQGPSGPAGGKGERGNPGGAGAAGAQGPMGVRGPA
GAPGADGGKGEPGLAGVPGGPGHQGPSGMPGERGAVGGPGVKGEKGEAGHKGPDGNAGRD
GARGLPGPAGPPGPTGANGDKGESGSFGPSGPAGPRGASGERGEVGPTGPPGFAGPPGSD
GQTGARGERGPGGGKGEVGPSGPAGPAGQSGPAGPAGVGGPGGPRGDNGPPGLTGFPGAA
GRVGGAGPAGIVGPPGAAGPTGKDGPRGPRGDPGPTGAPGESGMIGQPGPAGEKGSSGDP
GPAGPPGAPGTGGPLGFQGMIGLPGARGDRGSPGPLGVLGAPGSDGPVGPAGARGLAGNI
GMPGMTGPQGEAGREGSPGNDGPPGRPGSPGFKGDRGEPGPSGVTGVSGAPGASGPSGAA
GRPGNRGEAGPGGPTGSAGAAGARGAAGPAGIRGEKGVAGDKGERGMKGLRGHPGLQGMT
GPSGPPGDSGPAGANGPAGPRGPAGPHGPPGKDGRAGGHGTAGAPGSRGPPGYVGPSGPP
GLPGPPGPPGASGGGYDLSGYDEYRADQPALRAKDYEVDATIKSLNTQIDNLLTPEGSRK
NPARTCRDIKLSHPEWTSGFYWIDPNQGCMNDAIKVFCDFTTRETCIYAHPESIAKKNWF
RSTMAKKHVWFGETINGGTEFTYNDETLSPQSMATQLAFMRLLSNQASQNITYHCKNSVA
YMDGETGDMKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIEYRTNKPS
RLPVLDIAPLDIGGAEQEFGLDIGPVCFK
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagcg
tcatgtcaatacgcgggtctcaaaggacctcgaggtgacaggggtccacccggcccagat
ggaaaagatggcaaacctggactccctggacccgccggcccccctggtccccctggtctt
ggaggaaactttgctgctcagtatgatggtgtaaaagctcctgatcctggccctggaccc
atgggtttaatgggtccccgaggacctcctggacctcccggacctcctggaccccaggga
cacaccggacaccccggtgagcccggagagcctggacagagcggcccccttggtccccgt
ggcccccctggaccccctggcaaatctggagaggacggtaacaatggcagacctggcaag
cccggagacagaggtacccctggaccccagggtgctcgtggattccccggaacccctgga
cttcccggaatgaagggacacagaggttaccctggtctggatggtcgcaaaggagagtcc
ggcggtgctggcctcaagggtgagactggtgcccgtggagctgctggaagtcctggacag
gctggagctcgtggctcatccggtgagagaggtcgtgctggtcctgctggcgcccctggt
gctcgtggtgctgatggcaatgttggacccgctggtgctgctggtcccgctggtgcttct
ggtcccccaggtttccctggtggccctggccccaagggagaggttggacccgctggagct
aatggacccagtggagcacagggtccaagaggagagcctggtcccaatggtgccgttggc
cccgttggtcccgctggtaaccctggtgctaatggtctgaacggagccaagggagctgct
ggtactcctggtattgctggagctcctggtttccccggaccgagaggaggacctggacct
cagggccctcagggtgctgtaggacaaagaggccttgctggagatcctggtgttcagggt
attaagggagatgccggtggcaagggagagcctggtaacgctggacctcctggacctcct
ggttctcagggtgaggaaggaaagagaggacccggtggtgagcctggcgctagtggacct
gctggtctccgtggagccagaggtggtcctggcagccgtggcatgcctggtggcgatgga
agagctggcccagttggtatgcccggtgcccgtggcgccactggtgcagctggacctcgc
ggaccccctggagatgctggccgcaatggtgagcctggtcctgctggtgccaggggtctc
cccggaagccctggaaactctggacccccaggaaaagagggacccgctggagctgctgga
caagatggccgcaccggacctcccggcccaactggacctagaggccagcccggaaacatt
ggcttccctggacccaagggagttgctggtgagcctggtaagcctggagacaagggagcc
actggccccactggactgagaggagcccctggacctgatggcaacaatggagccactggt
gctgttggacccgctggtggtcctggtgagaagggagaacagggtccctctggagctact
ggcttccagggtcaacccggtcctgctggatctgttggagagggtggaaagcccggagac
agaggtatcccaggagaccagggtccttccggacctgctggtggcaagggagagcgtggt
aaccccggtggtgctggagctgctggagctcagggtccaatgggagtccgtggaccagct
ggagcccccggagctgatggtggcaagggagagcccggtcttgctggagttccaggtggt
cctggacatcagggacctagcggcatgcctggtgagcgtggagctgttggtggccctgga
gtcaagggagagaagggtgaggctggacacaaaggacccgatggtaacgctggcagagat
ggtgcccgtggtctccctggacctgctggacctcctggaccaactggagccaacggtgat
aagggtgagtccggttccttcggaccttctggacctgctggacctcgtggagcctcgggt
gagcgcggagaggttggacctactggacctcctggatttgctggaccccctggctctgat
ggccagaccggagcaagaggcgagcgtggacccggtggtggaaagggagaagttggtccc
tctggacctgctggacccgctggacagtctggacccgctggtcccgctggtgttggtgga
cctggtggtcctcgtggagacaacggtccccctggtctgactggtttccctggtgctgct
ggcagagttggtggtgctggtcccgctggtattgttggaccccctggcgctgctggtccc
actggtaaagatggtcctcgtggaccccgtggagaccctggtcccactggtgcccctgga
gagtctggcatgattggacaacccggcccagctggagagaagggatccagtggagacccc
ggtcccgctggtcctcctggtgctcctggaactggtggtcctctgggattccagggaatg
attggtctgcctggtgccagaggagatcgtggttcccctggtcctcttggtgttttggga
gctcctggcagtgacggacctgttggacccgctggagctcgtggactagctggaaacatt
ggtatgcctggtatgaccggaccccagggagaggctggccgtgagggtagccccggtaac
gatggacctcctggtcgtcctggatctcctggattcaagggagaccgtggtgagcccgga
ccttctggtgtcacaggagtctctggagctcccggtgcctccggaccctctggagctgct
ggtagacctggaaaccgtggagaggctggcccaggaggtcccactggttccgccggagct
gctggagccagaggtgccgctggccccgctggaatccgcggagagaagggagttgctgga
gacaagggagagagaggcatgaagggactgcgtggacaccctggtctccagggaatgacc
ggaccttctggaccccctggtgactctggacctgctggagcaaatggacctgctggaccc
agaggacctgctggaccccatggaccccctggtaaggatggtagagctggaggccatggt
actgcgggtgctcctggttctcgtggaccccctggatacgtcggaccttctggtccccct
ggtcttcccggtccccctggacctcccggtgcttccggtggcggatatgacctttctgga
tacgatgagtacagagctgatcagcctgctctgagagccaaggactacgaggttgatgcc
accatcaagtccctcaacactcagatcgacaacctgctcacccccgagggatccaggaag
aaccccgcccgcacctgccgtgacatcaagctcagccaccccgagtggaccagcggattc
tactggatcgaccccaaccagggctgcatgaacgacgccatcaaggtcttctgcgacttc
accacccgcgagacctgcatctatgcccaccctgagagcatcgccaagaagaactggttc
agaagcaccatggccaagaagcacgtctggttcggagagaccatcaacggtggcaccgag
ttcacctacaacgatgagaccctcagcccacagagcatggccacccagctggccttcatg
cgcctgctgtccaaccaggccagccagaacatcacctaccactgcaagaacagcgtcgct
tacatggatggtgagactggcgacatgaagaaggcagtggtgctccagggctccaacgac
gtggagctgagggccgagggcaacagccgcttcaccttctccgtgctggaggatggctgc
actagacacactggcgaatggagcaagacagtgatcgagtacagaacaaataaaccatct
cgcctgcccgtcctcgacattgcacctttggacattggtggagctgagcaggagtttggt
ttggacattggcccagtctgtttcaaatag
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