Takifugu rubripes (torafugu): 101074214
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Entry
101074214 CDS
T02386
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03008
Ribosome biogenesis in eukaryotes
tru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101074214 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
101074214 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101074214 (xrn1)
03009 Ribosome biogenesis [BR:
tru03009
]
101074214 (xrn1)
03016 Transfer RNA biogenesis [BR:
tru03016
]
101074214 (xrn1)
03036 Chromosome and associated proteins [BR:
tru03036
]
101074214 (xrn1)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101074214 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
101074214 (xrn1)
Ribosome biogenesis [BR:
tru03009
]
Eukaryotic type
Pre-60S particles
RNases
101074214 (xrn1)
Transfer RNA biogenesis [BR:
tru03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
101074214 (xrn1)
Chromosome and associated proteins [BR:
tru03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101074214 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
101074214
NCBI-ProteinID:
XP_029686376
Ensembl:
ENSTRUG00000004895
LinkDB
All DBs
Position
22:8741372..8759014
Genome browser
AA seq
1684 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEIVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYVEVLFRIIKPCKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLEYFVHNKVSTDKLWQNVRVYLSGHETPGEGEHK
IMEFIRSENIKPDHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSVLRNHLGSNYDFERIIDDWILMGFLVGNDFIPHLPH
LHISHDALPLLYKTYISVLPSLGGYLNENGNLNLKNFEKYMEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEKEAAIQATVMEDSTRCLTASEKPAGDDEEEDDDLFETEFR
QYKRTYYMTKMGVDVVSDDFLAMQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAPFLSD
IKNVAELKLTFDLGKPFMPFQQLLAVLPAASMELLPEAYRHLMNSENSPIIEYYPHDFKT
DLNGKQQEWEAVVLIPFIDERCLLAAMEPWNHQLTKQERSRNCHTECAVYSYDPEADFKY
SSTLPQLFPDIIRCHVKKEHIPMDAWQVPMNHVRRAIDRSALYFCGFPTLQHIKHKFYRK
KIGVVVFQQSSRGENTILDILPSNEEETVCDDVTAQVLGTSVFVNWPHLEEARIVAVSDG
EVRFCLDEPPGLQRMYNRASTPPPTKVTCLSDKEQKDWVKDVQGITEHFLKRKGIVVNET
AVLLYGQLLTGRKYVPKANGIVEIEKQWAKQVLPFAYQTVVKDIKAIYSSLPCYKSLDEL
FPPTTTVFMVGNPYYGAMGEVQDSSDVIKEGRVRVVFSIPQEPQLEMLIQNQHKYCVRYS
PGYVLASRLGISSNLVSRFSGCILIGRGSKKNPCGEHRTNIGLNLKFNKKNEEVPGYTKR
TEKEWLYSAAVEELLAEYLDRFSEVFHSVSKNTHDDIFYEDDIWPELDQNGAEKVAEITS
WLKSHPVSSVTRTSCELQVLDAAIVERIGEAVEKAKVKKSSKKVRVTVKPHLLFRPLEQQ
QGVVPDLDAEYRLFDRVVNVRESFTVPLGLKGTIIGIKGAEREAEVLYEVLFDEEFAGGL
NIRSASCRGYRLPPCALINISHGSRADHSSHRLTAIVKPQSTPAGSFHSQRQLGGLNHSP
RSPFIPTQQHNKHGALKAGSQGSRNSPSNGLMQKQQGKNKEMYSDVWQTLQNSGPPHTPP
THWHNNDKHFQSCGNQNSNKTASTGVIRLLKKTDDANSVQPSENTPNKAKIEFEELIASL
KISKDNQQTPLPPAPPPTTQLDGPLSPQSFAMKGTLVLKEMLKIDGAGKECSSSQVAAHS
SERQQNKKQSAKKLAANMNAPQSDPPTSLPHAVLTSKVSDLVHICVALGMAPPEFNYISN
QQGLIICQVKLSNGLMVHGPQCQSENDAKENAAFIALQRLSSVGTGFPLPPPMYPGMGHI
PQPSIRGMLPIFNHQGGLLLPPQGYPSSALWGMLPPPNPHNPQFYSAAGAFPGNPRPQAP
AGPPIGSHNQFTPLQVTKKLVSAKKNHGTQEFYNAAHTAAKRQSDKEQNLQCSPKVEQTL
QNDCNPKISSPDQVTAAPTTAAAMTSQHTPPKQNVPSRGSTPGSASKRRHRKLAVNFEAA
KVSE
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaaattttaccgatggatatcagagcgttacccttgtctcagtgaaatt
gtcaaggaacatcagataccagagtttgacaatctctatctggacatgaatgggatcatt
catcagtgttcccatccaaatgatgaggatgtccattttcgcatctcggaggagaagatt
tttgctgacatcttccactatgtggaggttctctttagaatcattaagccatgcaaggtc
tttttcatggcagtggatggggtggcacccagggcaaagatgaaccaacagagaggccgg
agattcaggtctgccaaagaagcagaggagaaaatcaaaaaagctctcgataaaggagaa
gttctccctacagaggctcgctttgactccaactgtatcacacctggaactgacttcatg
gcaagactccaggagcagctggaatattttgtccacaacaaagtctccacagacaagctg
tggcagaacgtcagggtttacctctctggtcatgagactccaggtgaaggagagcataag
attatggagttcattcgctctgagaacatcaagccagatcatgaccccaacacccggcac
tgcctttatggtctagatgctgacctgataatgttgggtttaacaagccatgagccaaat
ttctccctgctcagagaagaggtccgttttggaggaaaaaagtcccagaagaggataacg
gctccagaggagacaacatttcacttgcttcacttgtctctgatgagggaatacattgac
tatgagttctctgtgctcaggaaccacctcggctcgaattatgactttgagaggatcatc
gatgactggattctaatgggcttccttgtaggaaatgattttatccctcaccttcctcat
ctccacatcagccatgatgccttgccgttgttatacaagacatacatcagtgttctgccc
agtctggggggttatttaaatgaaaatggtaatctgaacctgaagaactttgagaaatac
atggagaaactttctgagtttgacagggaacattttagtgaggtctttgttgacctgaag
tggtttgagagtaaagttggtaacaagtatctgaatgaagcggctggattagcagcagag
aaggaagctgccatccaagccacagtcatggaggactctactcggtgtctgacggcttct
gaaaagccagcaggggatgatgaggaagaggatgatgacttatttgaaaccgagttcaga
cagtataagcgcacctactacatgaccaagatgggagtggatgtcgtatctgatgacttc
ctggctatgcaagccaaatgttatgttgaaggaatccagtggatcctgcattactattat
catggagttcagtcttggagctggtactacccctaccactatgccccgttcttatcagac
atcaagaatgtagcagagctaaagctgacctttgaccttgggaagccatttatgccattc
cagcagctcctggcagtcttgcctgctgcaagcatggagctgctgcctgaggcttacagg
cacctgatgaacagtgaaaattcacccatcattgaatactacccacatgacttcaagact
gatctcaatggcaagcagcaagaatgggaggctgtggtccttattcccttcatagatgag
aggtgcttactagcagcaatggagccctggaatcaccagctgactaaacaggagaggagc
aggaattgtcacacagagtgtgcagtgtattcctatgacccagaggcagactttaaatac
tcctctactctacctcaattattccctgacatcatacgctgccatgtcaagaaagagcac
attcctatggatgcctggcaagttccaatgaaccatgtcagaagagccattgaccgctca
gctctgtatttctgtggtttccccacgctacaacacataaaacacaagttttacaggaag
aagattggagtggttgtgtttcaacagagcagccgtggtgagaacaccatactggacatt
cttcccagtaatgaagaggagacggtttgtgatgatgttactgcacaggttttgggtaca
tcggtgtttgtcaactggccacatctggaggaagctcgcattgttgcagtatctgatgga
gaagtcaggttttgtctggacgaaccacctggtctccagagaatgtacaatagagcttct
actcctcctcccaccaaagttacctgcctgtcagacaaggagcagaaggactgggtaaag
gacgtccaaggaatcactgaacatttcttgaagaggaaaggcattgttgtcaacgagaca
gcagtgcttttatatggccagttactaacgggaaggaaatatgttcccaaagccaatggc
attgtggaaatagagaaacaatgggccaagcaggtcctcccttttgcctaccagactgtg
gttaaggacattaaagccatttactcatctttgccctgctacaagagtttagatgagctc
ttccctccaacaaccactgtcttcatggtggggaacccctactatggtgccatgggtgag
gtgcaggattctagtgatgtcatcaaagaaggtcgagtgcgtgtggttttcagcatacca
caggaaccacagctggagatgctcatccagaatcaacacaagtattgtgtgagatacagt
cctggatatgttctggcatcccgtcttggcatcagcagcaacctcgtttctcgcttctca
ggatgcatcttaattggcagaggctctaaaaagaatccctgtggggagcatagaactaac
attggcctgaatctgaagttcaacaagaagaatgaggaggttcctggttacaccaagaga
actgagaaggagtggctctactctgctgctgtagaggaattgctcgctgaatacttggac
aggttctctgaagtatttcactctgtgtccaagaacactcatgatgatattttttatgaa
gatgatatctggcctgaactcgaccaaaatggagcagagaaggtcgctgagatcacttca
tggttgaagagtcacccagtgagctccgttaccagaacgtcctgtgaactgcaagtgtta
gacgctgccattgtggagaggatcggggaggcagtggagaaggccaaggtaaagaagagc
tccaagaaagtgcgtgtgacggtgaagcctcatctccttttcagaccattagagcagcag
caaggtgtggttcctgacctggatgcagagtatcgtctgtttgacagagttgtcaatgtc
agagaaagttttactgtcccactgggcctcaagggaacaatcattggcattaaaggagcg
gagcgtgaggcagaagttctgtatgaagtgctttttgatgaagaatttgctggaggtctc
aacatcaggagtgcgtcctgtcgtggctatcgcctccctccctgtgctcttattaatatc
tcccatggatccagagcagatcactcctcacacaggctcactgccattgtcaaacctcag
tccaccccagccggtagtttccactcacaacggcagctggggggcctgaaccactcccca
cggtcaccttttatccccacacagcagcataacaagcatggtgcgttgaaggccggctcc
cagggcagcaggaactccccctctaatggtctgatgcagaaacaacagggcaagaataag
gaaatgtacagtgatgtgtggcagactctgcagaactcggggcctcctcacacccccccc
actcattggcacaacaatgacaaacatttccaatcatgtgggaaccagaactcaaacaaa
actgcctccactggtgtcatcagactcttgaagaagactgatgatgccaattccgttcag
ccgtcagagaacacacctaacaaggctaagattgaatttgaagagctgattgcgagtctg
aagatctccaaagataatcagcagaccccactccctcctgctcctccacccaccacccag
ttagatggcccgttgtctcctcaatcttttgccatgaaggggaccctggttctgaaggag
atgctgaagattgatggtgctggaaaagaatgttcctcctcccaggtggcagctcacagc
agcgagaggcagcagaacaagaagcagtcggccaagaagctggcagcaaatatgaacgcc
ccccagagtgaccctccgacatcgctgcctcatgctgtgctgaccagtaaggtttcagat
ctggtgcacatctgtgtagcgttaggaatggcaccaccagagttcaactacatcagcaac
caacagggtctcatcatctgtcaggtgaagttgtccaacggattaatggttcacggccca
cagtgccagtcagaaaatgacgcaaaggaaaacgctgccttcattgctcttcaaagactg
agctcggtaggaacaggcttccccctgccccctccaatgtatcctggaatgggtcacata
ccccagccatctatacgaggcatgctccccatcttcaaccatcaaggtggtctgctcctg
ccccctcaaggatacccctcctcagccttgtggggtatgttgcctccacccaacccccat
aatccgcagttctacagtgcagcaggggccttcccaggtaacccccgcccccaggctcca
gcaggaccacccatcggctctcacaaccagtttactcctttacaggtcactaagaagcta
gtctccgccaagaaaaaccatgggactcaagagttctacaacgctgcccacactgcagcc
aagcgccagtcggacaaagaacaaaaccttcagtgttcccctaaagtcgagcagacactc
caaaacgactgcaaccccaaaatctcaagtcccgaccaggtgaccgccgcgccaaccacc
gcggcagcgatgacgtcccaacacacacctccgaaacaaaacgtgccatcaagaggaagc
acccctggctccgcctccaagagaaggcacaggaagctggctgtcaacttcgaagcagct
aaagtgtccgagtga
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integrated database retrieval system
