Takifugu rubripes (torafugu): 101075227
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Entry
101075227 CDS
T02386
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03015
mRNA surveillance pathway
tru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101075227 (pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
101075227 (pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101075227 (pabpc1)
03041 Spliceosome [BR:
tru03041
]
101075227 (pabpc1)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101075227 (pabpc1)
mRNA cycle factors
Stress granule specific factors
101075227 (pabpc1)
Spliceosome [BR:
tru03041
]
Complex C
Other components
Complex C specific factors
101075227 (pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
RRM_3
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
101075227
NCBI-ProteinID:
XP_003965889
Ensembl:
ENSTRUG00000011577
LinkDB
All DBs
Position
7:6442352..6446999
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQTQNRA
AYYSANQLAQLRPSPRWTTQGVRPQHFQNMPGAMRPSAPRPQALNAIRPTAAGNAQVPRM
MASQRMPAQTLGQRAAGASTTAAAPVRTMPQYKYAAGVRNPQQHMASQPQVPMQQPAVLV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQDVHPSLAGKITGMLLEIDNSELLHMLES
PESLRSKMDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcccagctacccaatggcttccctctatgtgggagacctgcatcca
gacgttactgaggctatgctctacgagaaattcagccctgccggacccatcttgtcaatc
agggtatgcagagacatgattacccggcgatcccttggctatgcctacgtcaatttccag
cagcctgcagacgctgaacgagccctcgataccatgaactttgacgtgatcaaaggaagg
cctctacgcatcatgtggtctcagcgtgacccttcacttagaaagagtggtgttggcaac
atcttcatcaagaacttggataagtccattgacaacaaggctctctatgacaccttctct
gcttttggaaacattctttcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccatgaggccgctgagcgtgccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtgtttgttggacgattcaaatctcgtaaagagagggag
gctgagcttggggcacgtgccagggaattcaccaatgtttacatcaaaaactttggagaa
gacatggatgatgagaaattaaaggagttgtttagcaaatatgggccagccctcagtatc
cgggtgatgacagatgatggtggcaaatccaagggattcggatttgtcagctttgagaga
catgaagatgctcagaaggctgtagatgacatgaatggaaaagaactgaatggcaggcag
gtctatgttggccgtgcgcagaagaaaggagaacgccagaatgagctcaagcgtaaattt
gaacagatgaaacaggatcgcatgaccagataccagggcgtcaatctttatgtgaaaaac
ttggatgatggcctggatgatgagcgtctgcgtaaagaattctctccgttcggaaccata
acgagtgctaaggtgatgatggagggtggccgcagcaagggctttggatttgtgtgcttt
tcttctccggaggaggcgaccaaggctgtaacggagatgaatgggcgcattgttgccaca
aagccactgtatgtggctctggctcagcgcaaggaggagcgccaggcccatttaaccaat
cagtacatgcagaggatggccactgtgcgtgctgtgcccaacccagtcctcaacccgtat
caacctgcaccaccctcgggctatttcatggcagccatacctcagacccaaaaccgtgct
gcatactattcagccaaccagctggcccagctccgccccagcccccgctggactactcaa
ggagtgcgcccacagcacttccaaaacatgccaggtgctatgcgcccatccgcgccgagg
ccacaggctttaaacgccatccgtcctactgccgctggaaacgcccaggttccacgcatg
atggcttcccagcgtatgcccgcacagaccctaggtcagcgtgctgctggtgcatcaacc
actgccgctgctccagtacgaaccatgccccagtacaagtatgctgccggtgtgcgcaac
ccccagcagcacatggcctcccagccacaggtacccatgcagcagccggctgtccttgtc
caaggtcaggagcccctgacagcatccatgctggcatctgcccctcctcaggaacagaag
cagatgctgggtgaacgtctgttccccctgattcaggatgtgcaccccagcctggcgggt
aagatcacaggtatgctgctggagatcgacaactctgagcttctacacatgctcgagtcc
cccgaatcgctgcgctcaaagatggatgaggcggttgctgtgcttcaggcccaccaggcc
aaggaagctgctcagaagtccaccacccctgctggggttcccagtgtctga
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