Takifugu rubripes (torafugu): 101079628
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Entry
101079628 CDS
T02386
Name
(RefSeq) collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04510
Focal adhesion
tru04512
ECM-receptor interaction
tru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101079628
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101079628
09142 Cell motility
04820 Cytoskeleton in muscle cells
101079628
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tru04147
]
101079628
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101079628
Exosome [BR:
tru04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101079628
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101079628
Hyaluronan
Extracellular matrix or blood plasma proteins
101079628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
101079628
NCBI-ProteinID:
XP_011615557
Ensembl:
ENSTRUG00000004264
LinkDB
All DBs
Position
22:complement(13056512..13066950)
Genome browser
AA seq
1012 aa
AA seq
DB search
MLGLEVFAFCLLFGALAHSQTTECVMKNECPIDVYFTIDTSETIALQEPPPGSLVESIKE
FTRQFVMRLENAEYRGAVRINWNIGGLHFSQQQRVFSRIGSKTDFMNGVSGIQYLGKGTY
TDCALMNMTQEMLRSPSDPKALRFAVVITDGHVTGNPCGGIKVSAERARDEGIHIFAVAA
SKNIDEMGMREIANSPGMVFRRDFMAVDLSEGKPIIHTKTIDRIIKTMKHLAYVECHSVS
CLETPGPSGPKGHRGQKGAKGDSGEPGPKGEIGRPGDPGIEGPIGQPGTKGEPGLKGDKG
EIGFQGKKGADGVPGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGHPGDVGELGPSGADG
EKGDAGRPGRPGPPGGEGDTGPKGEMGSPGSPGYPGEKGNAGSPGNPGATGEAGRRGDYG
PKGAQGPGGTRGEKGEMGSEGLRGLAGESGKKGAKGDNGLPGPRGSPGAPGESGRNGTRG
DAGDVGQRGEPGPPGPKGDPGRPGFNYPGSRGPTGERGEKGNHGPRGSRGDCGQKGEPGN
KGTPGEPGEPGHRGEPGQRGPRGEGGRNGDPGPEGDPGLTECDVMNYIRETCGCCDCEKR
CGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSLTKDPKSETGTRVGVVQYSHSGT
FQAIRPDDPKIDSLTSFKEAMKQMEWIAGGTWTPSALKYAYDNLIRDSRRAQAKVTVVVI
TDGRFDPRDDDSLLTYLCSDPNVDVNAIGIGDMFSQIEENEILKSIACQRDGKVLGMRRF
ADLVAEEFIDRIETVLCPDPVVVCPDLPCKSEPAVASCVRRPVDMVFLLDGSERMGLENH
RRAKEFIENVARRLNLANSNSDERDARIALLQYGSPTEQRVEFPLTYNFTVISDSLANVD
YMDSSSALGSAIIHAVNNIVIPRQGDRLARRHAELAFIYITDGITSREQLDEGVTAMRRV
EGVPTVIAIGKDTDEEVLRKVALGDTTAIFRADNYNMLNKSSFFERFIRWIC
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgctggggttggaggtttttgcgttctgccttctttttggagccctggctcacagccag
acaacagagtgtgtcatgaagaatgaatgtcccatagatgtatacttcactatagacacg
tctgagaccatcgccctgcaggagccgccgcctggatccctggtggagagcatcaaggag
ttcaccagacagtttgtgatgcgtttggaaaatgcggagtacagaggtgctgtgcggatc
aactggaacatcggaggactgcacttctcccaacagcaaagagtgtttagccgtattgga
tccaagactgatttcatgaatggcgtcagtggaatccaatacctgggcaagggcacctac
accgactgcgccctcatgaacatgacccaggaaatgttgcgctcaccctctgaccccaag
gccctccgcttcgctgtggtcatcacagacggccatgtgaccgggaacccatgtgggggc
atcaaagtgtcagcagagagggcgcgggatgagggtatccatatatttgccgtggcggca
tccaagaacattgatgagatgggaatgagggagatcgccaactccccggggatggtcttc
aggagggacttcatggcggtggacttgagcgagggcaaacccatcatacacacaaagacc
attgaccgcatcatcaagacgatgaaacatttggcgtacgtagagtgtcacagtgtgtcc
tgtctggagacaccaggaccatctggtccaaaaggccacagaggtcaaaagggcgctaaa
ggagacagtggtgaaccaggccctaaaggagaaataggtcgtccaggagaccctggtatt
gagggtcccattggtcagcccggtaccaaaggagaaccaggtttaaaaggagacaaggga
gagataggattccaaggtaaaaagggagctgatggtgtcccgggacgcaacggaacagat
ggacagaagggtaaaattggtcggatcggagctcctggctgcaaaggagatccaggcgac
agaggtcctgatggtcatcccggcgatgttggtgaacttggcccttctggagctgatgga
gagaagggtgatgctggacgtcctggaagacctggtccccctggtggagaaggagacaca
gggccaaagggagagatgggtagtcctgggtcgcctggctatcctggagaaaaaggaaat
gctggaagccctggaaatccaggagccacaggagaggcagggagaagaggagactatggg
ccgaagggtgctcaagggccaggcggaaccagaggagaaaagggtgaaatgggttcggag
ggtttaagaggtcttgcaggtgaatctggaaagaaaggagcaaagggagacaacggtctt
ccaggacccagaggatcacctggggcacccggagaatctggaagaaatggcactaggggt
gatgcaggtgatgtgggacaaagaggagaacccggaccacctggaccaaagggagatcct
ggaagacctggctttaactatcctggatcaagaggaccaacgggtgagagaggagaaaag
ggcaaccatggacctcgtggcagcagaggagactgtggtcaaaagggtgagccaggcaat
aaaggaactcctggggagcctggtgagccgggacatcggggtgaacctggccaaagagga
ccaagaggagagggtggacggaatggagatcctggacctgagggagatcctggccttacc
gaatgtgatgttatgaactacatcagggaaacctgtggctgctgtgattgcgagaaacgt
tgtggagctctggacatcgtgtttgtgattgacagctcagagtcagtgggtctgactaac
ttcaccctggagaagaactttgtcatcaataccatcaacagactgggctccctcaccaaa
gaccccaagtcagaaacaggcacgagagtgggtgtggttcagtacagtcacagtggaact
ttccaggccatccgtcccgatgatcccaagattgattcactgacttctttcaaggaagcc
atgaagcaaatggaatggatcgccggtggaacgtggactccatccgccctgaagtacgcc
tacgacaacctgatcagggacagccgccgagcccaagccaaagtcactgtggtggtcatc
acagacggacgctttgaccccagagatgatgattctttgctcacctacctgtgcagtgat
cccaatgttgacgtgaacgccatcggcatcggggacatgttttctcagatcgaggagaat
gagattctgaagagcatcgcctgccagagggatggcaaggtgttgggcatgaggcgcttt
gcggacctggtggccgaggagttcattgacaggatagaaactgttctctgcccagatcct
gtcgttgtatgtcctgatctcccttgtaaatcagagccggctgtggccagctgtgtgcga
cggccggtggacatggtcttcctgttggacggctctgagagaatgggattggagaaccac
cgcagggccaaagagttcatcgagaacgtggcccgccgcctcaacctggccaacagcaac
tcagacgagagggacgctcgcattgctttgctgcagtatggcagccctacagaacagagg
gtggagttcccgctcacttacaacttcactgtcatcagtgattcgctggccaatgtggac
tacatggattcctcttccgctctgggcagcgctatcatccatgcagtcaacaatattgtg
atcccaaggcaaggagaccgactggctcgtcgccatgccgagttggccttcatctacatc
accgacggaatcacatccagggagcagctggatgagggggtaactgccatgcgacgagtg
gaaggcgttcccactgtgatcgccataggaaaagacacagacgaagaggttctgcggaag
gtggcccttggggacacaaccgccatcttcagggcagataactacaacatgctgaacaaa
tcctcattcttcgagcgctttatccgctggatatgctag
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