KEGG   Terriglobus saanensis: AciPR4_1657Help
Entry
AciPR4_1657       CDS       T01408                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tsa  Terriglobus saanensis
Pathway
tsa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AciPR4_1657
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tsa03400]
    AciPR4_1657
Enzymes [BR:tsa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AciPR4_1657
DNA repair and recombination proteins [BR:tsa03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AciPR4_1657
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ADV82464
UniProt: E8V3A7
LinkDB All DBs
Position
complement(2005682..2008555)
Genome map
AA seq 957 aa AA seqDB search
MKMATAKKAPAKKSATKKTATEKAAKKVSAKAAVKSASPKTAVKKAAAKKAVPYADAGDQ
IDTQLARYRSMRNFGVTAEPSGGSKSSKLKSDAFPFVIQKHAASHLHYDFRLGWNGVLKS
WAVAKGPSYFTGDRRLAVQVEDHPMEYGGFEGIIPKGQYGGGTVMVWDQGTWEPHVDVDE
GLSKGTLKFAMNGTKMKGNWTLVRMNNMSGNKPNWLLIKEHDEFERTKDDPCVTAEEPNS
VVTGRSLEQIAAAETHVWQSNRTKNAGQAWFRNDDTQVGSDQTEAPETEAVVKAAPKEDK
KKASEKVIDLKAKLAPLPKEKLPDFIAPQLASHADTPPEHGDWLHELKLDGYRIQARKQG
DKIQLLTRTGLDWTHRMKPVAEALRSLKAKDALVDGEVVVLDESGISSFAKLQASFEQGE
KHPMTYFVFDLLHLDAADTRKLPLRERKSLLTAILPSSTEIQMSEHLHLDGGSVFQHACE
LHAEGIISKRADAPYTPGRNASWVKSKCVREQEFVIGGFTLPSNDTYGIGSLLLGYYRDG
KLIYAGRTGTGFTQKIHRMLRDKLEGLRTKSVTFDQIPAVAKRDANWVKPELLAQVRFAT
WTADDLVRQASYLGLREDKLAADVRREEATVAPKPRSARVSVKVPSASIAAKVAPAKAKK
AKSEDAPRTTVPVRLTHPEKILDETTGITKLQLAEYYWAIAEHMLPHIEDRPLSLVRCPE
GSGKPCFFQKHTNHMLPPGIGSVMVPNKKTGEPESYITLNTAEALAGLAQMGVLEVHPWG
SKNSDLEHPDRIIIDLDPDEAITWKQLSDSAESVRNGLETIGLKSFLKTTGGKGLHVVIP
MTPNHDWTQVKAWSHAFAQAFEKEQPDLYLTKMTKSARKGKIYIDYLRNERGATAVAPFS
PRARPGATVSVPLAWKELASPKHPAFSIQDFENWKARLKSDPWKNMQGIKQTLPGLS
NT seq 2874 nt NT seq  +upstreamnt  +downstreamnt
atgaagatggcgactgcaaaaaaggccccggcaaagaagtctgccacaaagaaaaccgca
acggaaaaagcggcgaagaaggtctctgcaaaggcggcggtcaagtctgcgtccccaaaa
accgccgtgaagaaagcggcggcaaagaaagccgttccttacgctgacgcgggcgatcag
atcgacactcagctagctcgctatcgctccatgcggaattttggtgtcacggcggaaccg
agcggaggttcgaaatcttccaagctgaagagcgacgctttccccttcgtcatccagaaa
cacgccgcctcccatcttcactatgactttcgtcttggctggaatggtgtgctgaaaagc
tgggctgtcgctaaaggaccgagctacttcaccggcgatcgccggcttgccgtgcaggtg
gaagatcaccccatggagtacggcggctttgaaggcatcatccccaaagggcagtacggc
ggcgggacggttatggtctgggaccagggcacatgggagccgcatgtcgatgtggacgaa
ggtctgtccaaaggtaccctgaagttcgctatgaacggcaccaagatgaagggcaactgg
accctggtccgcatgaacaacatgtctgggaacaaacccaactggctgttgattaaagaa
catgacgagttcgaacgcaccaaggacgatccctgcgtcacggcggaggaaccgaactcc
gtggtcacagggaggtcgctcgaacagattgccgccgccgaaacgcacgtatggcagtcg
aaccgtacgaagaacgcgggccaggcatggttccgcaacgacgacacgcaggtgggctcc
gaccaaacagaagcaccagagactgaagccgttgtaaaagctgcccctaaagaagataaa
aaaaaagcctcggaaaaggttattgatctcaaagccaagttagctcctcttccaaaggaa
aaactgcctgacttcatcgcgcctcagctggcctctcatgccgatacgccaccggaacat
ggcgattggctgcatgagcttaagcttgatggttaccgtattcaggcacgcaagcaggga
gacaagatccaactgctcacgcgcaccggtctggactggacgcatcgcatgaagcctgtg
gctgaagctctgcgaagtctcaaagctaaagatgcgcttgtcgatggcgaagtcgtcgtg
ctggatgagagcggcatctccagcttcgcaaagctacaggcctccttcgaacagggagag
aagcatccgatgacgtactttgtcttcgacctgctccatctggacgcagccgacacgcgc
aagctgccactcagagagcgcaagtcgctcctcacagcgatccttccctcctccactgaa
attcagatgagcgaacatctccaccttgacggagggtccgttttccaacacgcctgtgag
ctgcacgctgaaggcatcatctccaagcgcgcagatgcgccatacactcccggacgcaac
gcgagctgggtcaaatcgaagtgtgtccgcgagcaagaattcgttattgggggcttcacg
cttccctccaacgatacttacgggatcggttcccttttgctgggctactatcgcgacgga
aaactgatctatgcagggcgcaccggtacggggttcacccagaagatccatcgcatgctg
cgcgacaagcttgagggtcttcgcacaaaatccgtaaccttcgatcagatcccagccgtg
gccaagcgcgatgcgaactgggtcaaaccggaactccttgcgcaggtccgctttgccaca
tggactgcggacgatcttgttcgccaagcctcgtaccttggcctccgcgaagacaagctc
gccgctgacgtccgccgcgaagaagccaccgtggctcctaagcccagatcggcacgagtc
tccgtgaaagttccgagtgcgagcatcgccgccaaggtcgctcctgcaaaggccaagaag
gctaaatcggaagatgcaccacgcaccacggtgccggttcgcctgacgcatccagagaag
atcctggacgagaccacgggaatcaccaagcttcagctggcggaatactactgggccatt
gcggagcacatgcttccgcacattgaagacaggccactttcgctcgttcgctgcccggaa
ggaagcggtaagccgtgtttctttcaaaagcacaccaaccacatgcttccacccgggatc
gggagcgtgatggttcccaacaagaagaccggggaaccggagtcgtacatcacactcaat
actgcggaagcactcgcgggtctggcccagatgggcgtgctcgaagtccatccctgggga
tccaaaaactcggatctggaacatcccgaccggatcattatcgacctggatccggacgaa
gccattacgtggaagcagctctccgatagcgcggagagcgttcgcaacggtctggaaacg
atcggcttgaagagctttctcaaaaccaccggaggcaagggccttcacgtcgtcattccc
atgacgccgaaccatgactggacacaggtaaaagcttggtcccacgccttcgcgcaagcc
ttcgagaaagaacaaccggacctctacctgaccaagatgaccaagtccgcgcgcaaggga
aagatctacatcgactaccttcgcaacgaacgcggcgctaccgccgtggcccccttctct
ccacgagctcgtccgggcgctaccgtctctgttcctttggcatggaaagagcttgcttcg
cccaagcatccggctttcagcattcaggattttgagaactggaaggcgcgtttgaagtcc
gatccgtggaagaacatgcaagggatcaagcagacgcttccaggactttcttag

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