Thermus scotoductus: TSC_c20030
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Entry
TSC_c20030 CDS
T01414
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsc
Thermus scotoductus
Pathway
tsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TSC_c20030 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsc03019
]
TSC_c20030 (cshA)
03009 Ribosome biogenesis [BR:
tsc03009
]
TSC_c20030 (cshA)
Enzymes [BR:
tsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TSC_c20030 (cshA)
Messenger RNA biogenesis [BR:
tsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TSC_c20030 (cshA)
Ribosome biogenesis [BR:
tsc03009
]
Prokaryotic type
rRNA helicases
TSC_c20030 (cshA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Hera_DD
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADW22609
UniProt:
E8PN75
LinkDB
All DBs
Position
complement(1896090..1897655)
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AA seq
521 aa
AA seq
DB search
MEFKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA
QGLEASKERGRLPRALVLTPTRELALQVSGELQAVAPHLKVVTVYGGTGYGKQKEELTRG
CDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSATPKERQTLL
FSATLPSWARKLAERYMKSPVVINVVREEGITYQEEAIPAPGDRLSLLSDVLFVKAPKRA
IVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRVLVATDVAARG
LDIPEVDLVVHYRFPDKPETYQHRSGRTGRAGRGGEVVILYGPRERRELSELERAVGRTL
KRVNPPTPEEVLEAKWHHLLARLARVPERDYKLYQDFASRLFAEGRVEVVAALMALLLGG
APKEKSLLTGEEGWLTFKATGPRLTLPRLVALLKEAGLEVGKIAQGEEGFYVDLRPQDLP
RLSEVQGVKLERAKRVEVLPEAYAGAASRGGSPRGRRTSRF
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggagttcaaagactttcccctgaaggacgagattaaggaagcccttttgcgccggggt
atcaccgcccccacccccatccaggcggcggccttgcccctggccctcgagggcaaggac
ctcatcggccaggcccgcacgggcaccggcaagaccctggcctttgccctgcccatcgcg
caaggcctcgaggcctccaaggagcggggccgcctccccagggccttggtgctgaccccc
acccgggagctggccctccaggtttccggggagttgcaggcggtggccccccacctcaag
gtggtcacggtgtacgggggcacgggctacggcaagcagaaggaggagcttacccggggg
tgcgatgtggtggtggccaccccggggcgggccctggactacttgcggcaaggggccttg
gacctttcccaggtgcggatcgccgtcttggacgaggccgacgagatgctctccatgggc
tttgaggaggaggtggaggccatcctctccgccacccccaaggagcgccagacccttctc
ttctccgccaccctgccctcctgggccaggaagctggcggagcggtacatgaaaagcccg
gtggtcatcaacgtggtgcgggaggagggcatcacctaccaggaggaggctattcccgcc
cctggggaccgcctttccctcctgtccgatgtcctttttgtcaaagcccctaagcgggcc
atcgtcttcacccgtaccaaggcggaaaccgaggaggtggccacggggcttcttcgcctc
gggcacccggcgcgggccatccacggggatctttcccagacggaccgggaaagggtcatg
agggcctttcgggaaggggaagtaagggttctggtggccacggatgtggccgcccggggc
ctggatatcccggaggtggacctggtggtgcactaccgcttccccgacaagccggaaacc
taccagcaccgttcggggcgcacgggcagggccgggcgggggggtgaggtggtgatcctc
tacggcccccgggaaaggcgggagctttccgagctggaaagggccgtgggccgcaccctc
aagcgggtgaatccccccacgcccgaggaagtcctcgaggccaagtggcaccatctcctg
gcccgtctggcccgggtacccgagagggactacaagctgtaccaggatttcgccagccgt
ctgttcgccgaggggcgggtggaggtggtggcggccctcatggcccttctcctgggcggg
gcacccaaggagaaaagccttcttaccggcgaggagggctggcttaccttcaaggccacg
gggcccaggctcaccctgccccggctggtggccctcttgaaggaagcgggcctcgaggtg
ggcaagatcgcccagggagaggagggcttttacgtggacctccgcccccaggacttgccg
aggctttccgaggtgcagggggtgaagctggaaagggctaagcgggtggaggttctccct
gaagcctatgcgggtgctgcctcccgggggggatcgcctcgaggccgccgcaccagccgc
ttctaa
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