Candidatus Pseudothioglobus singularis: W908_05480
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Entry
W908_05480 CDS
T04071
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
tsn
Candidatus Pseudothioglobus singularis
Pathway
tsn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
W908_05480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsn03400
]
W908_05480
DNA repair and recombination proteins [BR:
tsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
W908_05480
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ALE02047
UniProt:
A0A0M4LPZ3
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All DBs
Position
complement(1064074..1065867)
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AA seq
597 aa
AA seq
DB search
MKNENLKIKLENLSKKSGVYKMLDKSGKVIYVGKAKNLKNRVSNYFAKSNQDEKTQLLQK
NIDDFSIIITKTETQALLLENDLIKQFKPKYNILLKDSKSYPYIYISNDKHPRLGMFRGK
KNKDYHYFGPYPSKYAARDALVLLKKIFKVRQCSNSFYRARSRPCLEYQIGLCSAPCVGK
ISDERYDQDVELVSLFLNGKSTKLLNQVSKKMKSASTDLDFEAAAKYRDQLISLRTIQEK
HSSQFTSDMDVVSILKDAEVHCIEIVFVRSGKQIGNETFFPKNAKKDSCERVLSAFLPLY
YLGKNTPKEIVISHKLGDKILLESGLSTKLIHKPKIDKKLFLETATLNAKENLKQRLLLK
YTKKKQLEGIQKTLALDSLPEVMECFDISHTMGEATTASCVVFEKGLPKTSEYRQFNIKD
ITPGDDYAAINQAVFRRYSRLLDSKKEMPDIVFIDGGLGQLNQAIMVMNSIGIDSVLLVG
VAKGEGRKAGLETLITVENDKVKRISLPPFDPALLLINHIRDESHRFAIKNHRKKRAKKR
TQSSLESIKGVGVNKRSALLNHFGGIQEIENASLDELQKVVGINYKLATKILESLKK
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaaaatttaaaaattaaattagaaaacctttcaaaaaaatctggcgtctat
aagatgcttgataaatcaggaaaagttatctatgttggcaaagcaaaaaacctaaaaaat
cgtgtttcaaattattttgcaaagtcaaaccaagacgaaaaaacacagttactccaaaaa
aatattgatgatttttcaatcatcattaccaaaactgaaactcaagcacttcttttagag
aatgatcttattaaacagtttaagccaaagtacaacattcttcttaaggactcaaagagc
tacccttatatttatattagtaacgacaagcatccccgtttagggatgtttagaggcaag
aaaaataaagactaccactactttggcccttatccatctaaatatgcagcaagagatgct
ctagttcttttaaaaaaaatatttaaggtaaggcaatgcagtaacagtttttacagggca
aggtcgcgcccctgtctcgagtaccaaattggattatgcagcgccccatgtgttggaaaa
atctctgacgaaaggtatgaccaggatgttgaattggtctctttatttttaaatggcaag
tcaacaaagcttctcaatcaggtatccaaaaaaatgaagtctgcctctactgatcttgat
tttgaagccgctgcaaaatacagagatcagcttatcagcctcagaacaattcaagaaaag
cacagctcacaatttacatccgatatggacgttgtcagcatcttaaaagatgctgaggtg
cactgcattgagattgtttttgttcgttcaggaaaacaaattggtaacgagacattcttt
ccaaaaaatgcaaaaaaagattcttgtgaaagagtcctaagcgcttttttaccgctctat
tatttaggtaaaaatacgccaaaggagattgtcataagccacaagctgggggataaaatt
cttttagagtctgggctatcgacaaagcttatccataagccaaagattgataaaaaactt
tttttggaaacggcaactctaaacgctaaagaaaatttaaagcagcgccttttacttaag
tatacaaaaaagaagcagcttgaggggattcaaaaaaccttagcactagattcactacct
gaggtgatggaatgttttgacatcagtcacaccatgggagaggcgacgactgcctcctgt
gttgtgtttgaaaaaggattacccaagactagtgagtacagacagttcaacatcaaagat
ataacccctggcgatgactatgcagcgattaatcaggctgtctttagaaggtattctcgt
ctactagattctaaaaaggagatgccagatattgtttttattgatggcgggctgggtcag
cttaaccaagccatcatggttatgaattctattggaattgactcagttctgctggtcggt
gttgctaagggcgagggcagaaaagcagggctagagactttaatcaccgttgaaaatgac
aaagtaaaaagaatttctcttccgccatttgatcccgctctccttttaatcaaccatatc
agagatgagtcacatcggtttgcaatcaaaaatcatcgcaagaaaagagctaaaaaaaga
actcagtcttctttggagtccatcaagggggttggtgtaaataaaagaagtgcactatta
aatcactttggcggtattcaagaaatagaaaatgcaagcttagatgagcttcaaaaagta
gttggcattaattataaattagcgactaaaatactagaatctttaaagaaataa
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