Trichinella spiralis: Tsp_01017
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Entry
Tsp_01017 CDS
T01609
Name
(RefSeq) retrovirus-related Pol polyprotein from transposon TNT 1-94
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RVT_2
Retrotran_gag_2
rve
gag_pre-integrs
DUF4219
rve_3
zf-CCHC
Retrotran_gag_3
Motif
Other DBs
NCBI-GeneID:
10904897
NCBI-ProteinID:
XP_003376808
LinkDB
All DBs
Position
Unknown
AA seq
1324 aa
AA seq
DB search
MDQVVNQLVEQVQALQAQLALKKPTVLASAVGGLPESKHLDGTNYSEWKFAMKNYLVDAG
LWHCVENENVDHELDQRALAKINLSIKPCASGDVRKAMTAKQAWEKLRCAYEDVGLVRRI
GLYSSLFKTRFEECGSMTAYIDRITSIADQLESIGKPLDNETVGGIILGGLPIEFQPLIL
GIQGSNQKITVEFVKGLLLQNNVQQLASPLPKDENCAFVSQSAKEKVKVRCNRRCFKCKQ
TGHILAKCPFVINDRRPSKNQKKSDKHLAASTNFAASCLLIQKATDGDKDWFLDSGATTH
LTHRDDWMEEYNGHTTHTVAIANGTNITTKGCGVVKIPLATKKTMVAHDVRHAPELALNL
LSVSRIAAQKKTLIFDENGCRIVDLAIEVPRQHILGTATQYNGLYRLNRCDQWAMTVHDV
PDLWHRRLGHLSRGSMKLLQDGQATGIPSDAITKTDCVTCLKGKQCRLPFPKSATKRSKE
VLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEVLPKFKDFIAMVERQ
TSKRVKCLRTDNGREYVNNMFAEFLVRKGIRHERTIPETPQQNGVAERMNRTLVEKARTM
LIDANLSPDLWAEAVGTANYLRNRCPTKALRKVTPEEAWSGRKPNLAHLKVFGCLAMVHV
PSGQRKKWDPKSEERIFVGYCETSKGYRTVDRKTKKMYVTRDVKFLESQFPGTQASKEGS
TNSLMNPDVGEETVIVWTSQDSGSTEMDPNPTAPLKVDTDSDKSIGQNPQPSTKTSPEEL
RRPLRNRFPNRNIFNSDFLLFQAQVREHSDPISYEEAVNRPDAKEWLKAINEELASHREN
QSWEPAVLPPHKKAIKSKWVFKTKYKEDGTIEKRKARLVAKGYSQLQGIDFEDTFAPTLG
YSSLRYLLSLAAKYNLEVDQMDVVTAFLNPSLNEEIYMELPSGVGDENNKYCRLRKSIYG
LKQASRAWYGMLDETLRSFGLNRLKNEPCIYFLRKNKTFLAVGVYVDDLLILSNNESSKN
ELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKT
PLDPNQVLSKAMMPRSDEEIKQMHAVPYREAVGCLVYLSQSCRPDICHAVGIVSRFCDNP
GKAHWTAVKRIFRYLKYTKAAKLVYRQIENAFTVYSDSDWGNDRDDRRSISGCVVCHSGA
AIAWTSKKQRTVALSTTEAEYMALSHAAKETAWLRSLQSELEKESSKPTLLCDNSGAVSI
STGQSSSARTRHIDIRYHFVKEKIQEGEIEMRQIPSADNAADMFTKALTPSRLATCLKLI
GMAA
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagttgttaaccagttggtcgaacaagtacaggccctgcaagcacagcttgct
ttgaagaagcctacggttctagcttctgcagttggtggcctgcccgagtcgaaacactta
gatggcacaaattattctgagtggaagttcgccatgaagaattacttggtggatgctggc
ttatggcactgtgtagaaaatgaaaatgtcgaccatgagctagaccagcgtgcattggca
aagataaacttgtcaatcaagccttgtgccagtggcgatgtccgcaaagctatgacagcc
aagcaagcgtgggaaaaactacgttgcgcctatgaagacgttggtttggtacgtcgcatt
ggcctctactcctctctgttcaagacccgattcgaagaatgcggatcaatgacagcttat
attgaccgtattactagtatcgcggatcaactagagtcgattggaaaacctctagacaat
gaaacggttggtggcataattctcggtggattgccgatcgaattccaacccctgatcctt
ggcatccaaggatcgaatcagaagatcacggttgaatttgtcaagggcttgttattgcaa
aataatgttcaacaacttgcttcgccattgcccaaggatgaaaactgtgcttttgtgagc
cagagtgctaaagagaaagtcaaggtacgttgcaatcgaagatgtttcaaatgcaagcaa
acgggacacattcttgcaaaatgtccatttgtaataaatgatcgccggccttcgaaaaat
cagaagaaatcagacaaacacttagcagcaagcacaaattttgctgcaagctgtcttctg
attcaaaaggcaactgacggcgacaaggattggttcctagattcaggcgccactacgcat
ttgactcatcgcgacgattggatggaagagtacaacggtcacactacacacacagtggcc
attgccaatggaacaaatataacgactaaaggatgcggggtcgtgaaaattcccctcgcc
actaagaagacgatggtggcccacgacgttcgacatgctccggaactggcactgaatctc
ctgtctgtaagtcgaatagccgcacagaagaagacgttaatcttcgacgaaaatggttgc
cgaatagttgacttagctattgaagttccgagacaacatattctcggtactgcaactcag
tataatggactatatcggctaaatcggtgtgaccagtgggctatgacagtgcatgatgtc
ccagatctgtggcaccgtcgactagggcatttaagtcgtggatcaatgaagctcttgcaa
gatgggcaagcaactggcattccatctgatgcaatcacaaaaacggattgtgtcacttgc
ttgaaaggaaaacagtgtcgtttgcccttccctaaatcggccactaagagatcaaaagaa
gttcttgaactggtacactcggacatatgtgggcccatgcaagtagcgtcagttggtggt
gctcgatactttctttcatttatcgatgatttctcacggaaatcgtttgtgtactttctg
aagcacaagaacgaagtcctgccgaagttcaaagacttcatcgcaatggtggaaaggcaa
acttcaaaaagagtgaagtgcctgcgaaccgataatggacgtgaatacgtgaacaacatg
ttcgcggaatttctggtgagaaaaggcattcgtcacgaacgtacgattcctgaaacgccc
caacaaaatggcgtcgcagaaaggatgaaccgaacgcttgtggaaaaggccagaacgatg
ctaatagatgccaacttgagtccagatttgtgggcagaggctgtgggcacagccaactac
ctacgaaacagatgccccacaaaggctctgcgaaaggtaactccagaagaagcttggtct
ggacgtaagccaaacttggcgcacttgaaagtctttggctgtttggcaatggtgcacgtt
ccctcaggacaacgaaagaagtgggatccgaaatccgaagaacggatcttcgttggatac
tgcgaaaccagcaaaggatatcgtactgtggaccgtaaaacgaagaagatgtatgtcacc
agagacgtgaaattcttggaatcacagttccctggcacccaggcgtcaaaggaagggtcg
acgaattcccttatgaatccagacgttggcgaagaaacagtgattgtgtggacttctcaa
gatagtggttctactgagatggatccaaatccaactgctccactcaaagtagacaccgac
agtgataagtccattggacaaaatccacagccgtcaacgaagacgtcgccagaagaactt
agaagaccgctgcgaaaccgtttccctaatcgaaacatattcaactcagattttcttctg
tttcaggcgcaagtgcgcgagcatagcgatcccatcagctatgaagaggcagtgaatcgt
ccggatgccaaagagtggctcaaggccatcaatgaagaattggcatcccaccgcgaaaat
caatcatgggaacctgccgttttgcctccacacaagaaggccattaaaagtaaatgggtc
ttcaagacaaagtataaagaagatgggacaattgaaaaacgaaaagcgcgacttgtggcc
aaaggatattcacaattgcaaggaattgattttgaagacacattcgctccaacattgggt
tattcttcgctccggtatcttttgtcattggcagcgaagtataatttagaagtagatcaa
atggacgttgtgaccgcgttcctgaatccaagcctgaatgaagaaatatatatggaactg
ccgagtggtgttggtgacgaaaacaacaaatactgccgtttaagaaaatctatctacggc
ctgaaacaggcgagtcgtgcatggtacggaatgttggacgagactcttcggagtttcggg
ctcaacaggctgaagaacgagccctgcatctattttcttcggaaaaataaaaccttcctc
gccgtcggtgtatacgtagacgatctactcattctttcaaacaacgagtcatcaaaaaat
gaattgaagatggcgttgtgtgagcgcttcaaaatgaaagatcttggcaaagcccattgg
tgtctaggaatcagaatcgtgcaagatgttgaaaatggcacgctgtcgattgatcaggag
cagtacattgaggaaatgctgcaccggttcagaatgtccgactgcaaaggggtgaaaaca
ccattggaccctaaccaggttttatcgaaagcgatgatgccgaggagtgatgaagaaata
aagcagatgcacgccgtaccgtacagagaagccgtcggctgcctggtttatttaagtcaa
agttgtcgaccagacatttgccacgcagtggggattgtcagtcgtttttgtgataatcct
gggaaggcacattggactgccgttaagcgcatcttccgatacttgaagtacacaaaagct
gcgaagttagtctacaggcagattgaaaatgcgttcactgtgtattccgattccgactgg
ggcaatgatagagatgatcgtcgatccatttctggatgcgttgtgtgccactctggtgca
gcgatagcatggacatcaaaaaaacagcgcacggtagcgttatcaacaacagaagctgaa
tatatggccctaagccacgctgcaaaagaaaccgcttggctacgctcgctgcaatctgag
ttggaaaaggagagcagcaagcctacactgctatgcgacaacagtggagccgttagcatc
agcaccggtcaatcatcgtcagcaaggacacggcacatcgacataaggtaccatttcgtc
aaagaaaagatacaagaaggcgaaatagaaatgcggcagataccaagtgcagataatgca
gctgacatgttcacaaaggccctgacaccgagccgcctggctacttgtctgaaattaatt
gggatggcggcgtga
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