Trichinella spiralis: Tsp_11475
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Entry
Tsp_11475 CDS
T01609
Name
(RefSeq) putative tetratricopeptide repeat-containing domain protein
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_8
TPR_16
TPR_7
TPR_MalT
TPR_19
TPR_11
SNAP
ANAPC3
TPR_10
TPR_9
Foie-gras_1
TPR_17
Saf4_Yju2
Motif
Other DBs
NCBI-GeneID:
10898710
NCBI-ProteinID:
XP_003373043
LinkDB
All DBs
Position
Unknown
AA seq
1781 aa
AA seq
DB search
MQGHLKRSKLLLHACATCYSSSQKNLMKMDPEMDLPSTSKHKVNQSENPPTPQFRWFAKH
IDVGVHAYSRGDYESALAAYEAALFSEPNNSKLLGNMALTLEKLERYDEALDKIQRSLEI
NPKSSINYKRKGAILLKKHLWPQAAVAFSFSIIHNPNDADLLNEVYKYMMESPLAEQIKI
AVNMLDDVANKRTPFAVLGVIGQQLLEMGYKRQAATILENALKLEEENWIFRGSTESSLT
LAYISLGNYERALECSKQALKEYEEAGDEATALNCKLRVASIHLQLGQFAEADHYYSEVL
ITSLRQRIWSYGIYSWLGLAMVAYKQGRYGPALHAHARCIAWANELQLPLYVKSNVHVSL
LHILVENRRIREALEVGSLLIQTVDQFGNLEDRAVTRITLGQIYMRCYSFPIRVTQLYKE
ASTIFGKLERWMYQFQASMAITLLCLDLEWLKRADIWARRLIKLAILCNSPPIDAQACRC
VGHVLLKLNALKTSALFLTRSIQIAEEFGDSALLREVRILKAKCMCRMRRHNEAIKLYRN
ALIASRQDSRPLEEVIALQGMCQCLIHIGDPEMANGQAAHLHRIAYDSKQSAPVRQHALC
ALADYLAQRQRYLDAITFYELYLTMVQEEGLQGCEIRACDCLGDAHRLLGAHALSIRYYT
QALSLAKQLGRVEDTIIGYYKLGRAQCIMGNFQEALKSGKFMLAMAHFLHWPVYKATALS
LLADILVGMGKPKVGLHIACRALALSKKTKDLSNEYDVSMQVAKALFAVGQYKEALEYYM
RAESLSETTQNWHSMFTAVHFMGKCYEKLEDFPKVISCRLRRLEIASRKGLVLDELCALS
AVSETCILINQHSEAITYLLRQRTLLDSDNGRAYCPRFYKRCMTLLTGSYAALNKWKWTA
PLYEELIEVESTCPRSRLLYGLSIFKLRMYETAMPHFKRAIELENENHVDETVIVDALAL
MAASAWATRKFEMAKAYAERRRQHAVEKSLPQSECLALLQLGMIVSTTDEVIAAAERALA
LAVSQKMDDAQLRATELIICKKEADGDIDGCKAMLENLRTILDFEEDSFSTALNLLNEAM
VLADSCSDDLVGAMVRIWLAIVLWADNKLQNSRNVFGDIFKAELSPYPCAETMLRGNWCG
ISLIEHTAFLLLFLLTIMKRPLEALEVAERLRRIYCSWSEESWRITYSNIILDKDLLLKE
YKNRTLVYCIQIENAVFFWILGGESDVQFWAYQMNNYKMHDLAMAIDSTYESEKNPKKLE
MEPWNRTPGIYKIQMPYKRAEEKVKKLVLAKIPQMGLIKARKRLEAALRTALRGSQFVDV
ISHKEMCNFPWKRLVEKLAPANQAAKIEIIPKIFTELDCFPAKLSEKERLSGDFLAACTF
MNDNMSKTPTTAELSSSRKWGKICRLAMALRLVLVAPKRRMALLLLVHLSCIVKQIEGKI
MGLDDILCILGFKRTQTLDTCCMDIEWYFPCENEDDILGYARNLFYALLHIPRDIMNAIS
RVSGEMAHIGTIVHIVLLKLAVEDSLFVGAVLSKEEAANGISTPLFMALNFKAFPISNNS
IRLVCILTESTMSDITQCWLALAGCFADKLSSIIRVSSEEASQILVRGEPSEIMVSKSPP
DIPQEMPICDEDWKIFESDVLFADILLDKKKKKNKQKWRKKSKLKKLHKWKSETALIDSE
KEWDKFASDGEEREEVSENEEDKDMIGCINAEIPSAEELEDLYEIYKECPLNNLLVVLLI
DKLSAVSQAQFPITVIQTGLSAHEIFQEFPYTYPNCALIQR
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtcatttgaaaaggtcaaaattgcttttgcacgcatgcgcaacttgttattca
agcagccaaaaaaatctgatgaaaatggatccggaaatggatcttccatcaacttctaaa
cacaaagttaatcagagtgaaaatccaccaacaccacagtttcgttggtttgcaaagcac
attgatgttggtgtgcatgcttattcgagaggcgattacgagtctgctctggctgcttac
gaggcggcgttgttctctgagccgaacaattcgaaattgttgggaaacatggctctaact
ttggaaaaattagaacgttacgacgaagctttggataaaatccaacgttcacttgaaatc
aaccctaaaagttcaattaattataagcgtaaaggagcgattctgctgaaaaaacatctt
tggccccaggcagcggttgctttttctttttccattattcataatccaaatgatgcagat
cttctgaacgaagtatacaagtatatgatggaatctcctcttgcagaacaaatcaaaata
gcggtgaacatgcttgatgacgtagctaacaaacgtacaccgtttgctgtgctgggcgtg
attggtcagcaacttcttgaaatgggctacaaacgtcaagcagctactattcttgaaaat
gctctcaagttagaagaagagaactggattttcagaggctcaacagaaagctctttaaca
ctcgcatatattagtcttggaaattacgagcgtgctttagaatgttcaaagcaggcgttg
aaagaatatgaagaagctggtgatgaggcaactgcgctaaactgtaaacttcgcgttgct
tccattcatttgcaacttggccagttcgccgaagctgatcattactacagtgaggttctt
ataacatctttaaggcagagaatttggtcatatggcatctattcatggcttggtttagcc
atggttgcttacaaacagggtagatatgggccagctctgcatgcacatgcacgttgcatt
gcttgggctaatgaacttcagctgccattgtatgttaagagtaatgtacacgtatctctt
ttgcatatattggtagaaaatcgcagaattcgtgaagcattagaagttggtagtctgtta
atacagactgttgaccagtttggcaatttagaagaccgagctgtaactagaataactctt
ggtcaaatttacatgcgctgttacagttttccaattcgtgtgacacaactttacaaagag
gccagtacaattttcggcaaattagagagatggatgtatcagtttcaggcatccatggcc
attactttactttgtcttgatttggagtggttaaagcgcgctgatatatgggctcgtcgt
ttgatcaagctagctatattatgcaattcaccgcccattgatgcacaggcatgcagatgc
gttggtcatgtactgttgaagctaaacgcgctcaagacttcagctctttttctgactcgt
tctatacagatagcggaagagttcggtgattctgctctattacgagaagtacgaattttg
aaagcaaaatgcatgtgcagaatgcgtcggcataatgaagcaataaagctctacagaaat
gctcttattgcatccagacaagattcacgccctttggaggaagttatagctttgcaaggt
atgtgtcaatgcttgatacacattggtgatccagaaatggctaatgggcaagcagcgcat
cttcatcgaatagcatatgacagcaaacaatcagcacccgtacgtcaacacgcgttatgt
gctttagctgattatctagctcaacggcaacggtatttggatgctattacattttacgaa
ttgtatttgactatggtgcaagaagaaggcctacaaggatgtgaaattcgagcttgcgat
tgcttaggggatgcgcataggcttcttggtgcacatgcattgtcgattcggtactatacg
caagcattatcattggctaaacaacttggacgagttgaagatacaataattggttattat
aagcttggcagagcccagtgcatcatgggcaattttcaagaagctctcaaaagtggaaaa
tttatgcttgcaatggcgcattttcttcattggccagtatacaaagcgactgctttatca
ttgcttgctgatatactagtcgggatgggtaaaccgaaagtaggacttcatattgcttgt
cgtgcacttgccttatccaagaagaccaaagatctcagtaatgagtatgatgttagtatg
caggtcgccaaagctttgttcgcagttggtcagtacaaagaagctttagagtattatatg
cgagcagaatcattgtctgaaactacgcaaaactggcattccatgttcacagcagttcat
tttatgggaaaatgctatgaaaaactagaagactttccaaaagtgattagttgtcgtcta
cgacgtctagaaattgccagtcgcaagggtcttgttttggacgaactgtgtgctttgagt
gcagtttctgaaacatgcatcttaatcaatcaacattcagaggctattacttatcttttg
cgccagaggactttgttagattctgataatggtcgagcttactgtccaagattttacaaa
aggtgcatgaccttgttaactggaagttatgcagctttaaacaaatggaaatggacagcg
ccattatatgaggaactaatagaagtggaatcgacttgtccgcgttcacgactactttat
ggattgtccatctttaagctgcgaatgtacgagacagctatgccgcattttaagcgtgca
attgaattagaaaatgaaaatcacgtagatgaaaccgtaattgtcgatgcattggctttg
atggctgctagtgcttgggcaacccgtaagttcgaaatggcaaaagcatatgctgaacga
agacgacagcatgctgtagaaaaatctctgccccaaagtgaatgtttagcattgctgcag
ttaggaatgattgtcagtactactgatgaagttatagcagctgcagagagagctttagcg
ctggcagtatctcagaagatggatgatgctcaattgcgtgcaacagaattgatcatctgc
aaaaaagaagcagatggtgacatagatggctgtaaagcaatgttagaaaacttgcggact
attcttgatttcgaagaagactctttctcaacagcactgaatttgctgaacgaagcaatg
gtgttagcagattcttgttctgatgatttagttggagcaatggtgcgcatttggcttgcg
atcgttctttgggctgacaataaattgcagaattctagaaacgtgtttggtgatattttt
aaagcagagctatccccttatccttgtgcagaaaccatgttgcgaggtaactggtgtgga
atttccttgatcgagcacacagcgtttcttcttctgtttctgttgacgataatgaaacgt
ccattggaagcgcttgaagtggctgaacgactgcgtcgtatttattgcagctggtcagaa
gaatcgtggagaattacttactctaatataatattagacaaagatctattgttgaaagaa
tacaaaaacagaacactagtatactgcattcaaatagagaacgcagtctttttttggata
ttgggtggagaatcagacgtgcaattttgggcataccaaatgaacaattacaagatgcac
gatttagcaatggcaattgattccacttatgaatcagaaaaaaatccgaaaaaattagaa
atggaaccatggaacagaacgcctggaatttataaaattcaaatgccatataaaagagct
gaagaaaaagtaaaaaaattagtgctagcgaaaattcctcaaatgggattgattaaagca
agaaaacgacttgaagcagctttgcgaacagcactgcgtggcagtcagtttgtagatgta
attagtcataaagaaatgtgcaattttccatggaaacgtttggtggagaaattagccccg
gctaatcaagctgcaaagattgaaattatacccaaaatttttacagaattagactgtttt
ccggctaaactttctgaaaaagaaagactttcaggagattttcttgctgcttgcactttc
atgaatgataatatgagcaaaactccaacaactgcagaattgagtagctctcgaaaatgg
gggaaaatatgccgcctggcaatggcactgcgacttgttcttgtggcaccgaagcgtaga
atggccttgcttcttttggtgcatttaagttgtattgtgaaacaaattgagggaaaaatt
atgggtttagatgacattttgtgtattcttggatttaaacgcacccaaacgcttgataca
tgttgtatggatatagagtggtattttccttgtgaaaatgaagatgacattttgggatac
gccagaaatttgttttatgctttactgcatattcccagagacattatgaacgctatttca
agagttagcggtgagatggcacatattggtacgattgtacatattgtacttttgaagctt
gctgtggaagattcactttttgttggtgctgtattaagtaaagaagaagcagcgaacggc
ataagcactcctttatttatggcattaaatttcaaagcgtttccgataagtaataattcc
attcgattggtatgcatcctgactgaaagcacaatgtctgatattacgcaatgctggctt
gcattggctggttgctttgcagacaagctttccagtataataagagtgagctctgaagag
gcgagtcaaattttggtgcgtggtgaaccaagtgaaataatggtcagtaaatctccacca
gatatacctcaagaaatgccaatctgcgatgaagattggaaaatatttgaaagcgatgtg
ctttttgctgatatattacttgataaaaaaaagaagaagaataaacaaaagtggagaaag
aaaagtaaattgaaaaagttgcataaatggaaaagtgagacggcgttgattgattctgaa
aaagaatgggataaatttgcatctgatggagaagaaagagaagaagtgtctgagaatgaa
gaagacaaagacatgattggatgcattaatgcagaaatacctagtgcagaagaattagag
gatctctacgaaatttataaagaatgtccattaaacaatctacttgttgtgctgctaatt
gacaagctcagtgctgtttcacaagctcaatttccaatcactgtcattcaaactgggtta
agtgcacatgaaattttccaagaatttccatacacttatccaaattgtgcacttatccaa
agatga
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integrated database retrieval system
