Trichinella spiralis: Tsp_11487 Help Entry Tsp_11487         CDS       T01609                                  Name (RefSeq) fanconi anemia group J protein   KO K15362   fanconi anemia group J protein [EC:5.6.2.3] Organism tsp  Trichinella spiralis Pathway tsp03440   Homologous recombination tsp03460   Fanconi anemia pathway Brite KEGG Orthology (KO) [BR:tsp00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     Tsp_11487    03460 Fanconi anemia pathway     Tsp_11487  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:tsp03400]     Tsp_11487 Enzymes [BR:tsp01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      Tsp_11487 DNA repair and recombination proteins [BR:tsp03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     BRCA1-B complex      Tsp_11487    FA (Fanconi anemia) pathway     Downstream FA components      Tsp_11487 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Helicase_C_2 DEAD_2 MFS_1 MFS_4 MFS_1_like Stealth_CR4 Motif Other DBs NCBI-GeneID:  10898557 NCBI-ProteinID:  XP_003373055 LinkDB All DBs Position Unknown AA seq 1052 aa AA seqDB search MEKRCEVIERKNSSSSVDKVENELLDDEEDLSELHRHYKGTVQTAAWVGSLLTGMYMLVG PVAGGLVNKFGARFVCIAGAVIAMVGFIISIWAPTLPFLMFSYGILGGRNLNMFFVLLLN NSNEIHVRFESPLLKHISDKKQAQPTTLRCISAYLIYNSASDNSLDSPFDRPDVFYPGSV ANLPPLLRTISSQSKERKVTGTSNMIDYHLLKHPSMLILSIANIVGMLGFYVPFVFLASY SDSLGNTKEQSSLLLSVIGITNTIGRIIFGWVSDQHWVTALTINNIALLLCGLLTCLCVV FTTYELLILYSTLFGFFIAPYVSLSAVILVEELGLENLTNSFGLLTLARGISAMVGSPLG EIICSPNCKRKNMDKFSTNKSQCSAANSAACQKRRVPKIFYATRTHKQLSQMIRELKKTE YKNVRMTIMASRDFTCLNDKVNNHCDKAAACLQVKDVLEIFLQFLLIKNCSYYKGLQAFG QETSMLRKHVQSSKKRVKDIWEIIEENDDFAWDIEELVEAGRKLNFCPYFASVDNMYQDA NLIFCPYGYLIDPVVRSSSNINLKGQVIIFDEAHNMEDECCEKASFQITKQELVDAVEYL SSIEELVPESKKSLQDNCTELVKSVIEWIDKKSVIEEMTNHSEKFYTKIWSGRAMYAELQ EMKLHYDAGNILQKAIQKFDSVFKPDNSLNVTGTIFEKKHDNQPLTVLEKLILILKYIYK DYRLTPTDSYDCYSYKFIFHDISSSARSVILASGTLAPLKTYANELGLPFQYLLEAPHVI LPDRVWIGATGVGPKHVPLKATYQLAQSTEFQDELGRLLIEICKVTPDGVLCFLPSYTFI DCLLTRWKKVPPSCNFQVNSSLWSQLNVYKMVVVEPRKNGSDVRLIMDRFTETIKDPKKV GPKCNGALLLAVYRGKISEGVDFADQQARAVVTVGIPYPDMEDMRIRLKIQYNNERLKNA KRIAEMAPLISGNQWYQAQAFRALNQALGRCLRHKLDWGALLLVDSRFQNAEYSCNLSTW IRKNLRCYDRFDQMICNLQTFVARFGANKINE NT seq 3159 nt NT seq  +upstreamnt  +downstreamnt atggaaaagagatgcgaagtgatagagagaaaaaattcttcatcatccgttgataaggtg gaaaatgaattgttggacgatgaagaagatttgtcagaattgcacagacattacaaaggc acggttcaaactgcggcatgggtgggatcacttctcacaggcatgtacatgctcgtcggc ccagttgctggtggccttgttaataagttcggtgcaagatttgtgtgcattgctggtgcg gtgattgcgatggtcggttttatcatttccatctgggcaccgactttaccattcttgatg ttttcttacggtatactaggaggtagaaatttgaatatgttttttgttttgcttttgaac aatagcaatgaaatccatgtacgattcgaatctcctcttctcaagcacatatccgacaag aagcaggcccagccgacaacactgcggtgcatttctgcttatttgatttacaattctgca agtgacaacagtctggacagtccattcgatcggccggatgtcttctatcccggctcggtg gccaatttacctcctcttctacgtacgatcagcagtcaatccaaggaacggaaagtgacc ggaacatccaacatgattgattaccatctgctcaaacatccgtccatgctcatcttgtcc attgccaacattgttggcatgcttggcttctacgtgccgtttgttttcttggccagctat tcggactcgcttggaaataccaaagaacaaagttcactgttgttgtctgtgattggaatt acaaacaccatcggtaggattattttcggctgggtatccgatcaacactgggttacagct ttgaccataaacaacattgctttgcttctctgtggtttgctcacttgcctctgcgtggta ttcacaacgtacgaactgttgattctctactcaacattatttggattttttatagcaccg tacgtgtccctcagtgcagtgattctggttgaagaactcggtttggaaaatttgacaaat tctttcggactgttgaccctggctcgcggaatttcagcaatggtcggcagtccattgggc gagatcatctgttccccgaattgtaagagaaagaacatggataaattttctacgaataaa tcacaatgttcggctgcaaattcagcagcatgtcagaaaaggcgagttccgaaaattttc tatgccactcgaacacataagcaattatcacaaatgattcgagaattgaagaaaactgaa tacaaaaatgttcgaatgaccatcatggccagtcgtgattttacttgtttaaacgacaaa gtgaacaatcattgtgacaaagcagccgcctgtttgcaagtgaaagatgtactagaaata ttcttgcaatttctattgataaaaaattgttcatattacaagggattgcaagcatttgga caagaaacaagcatgttgagaaagcatgtgcaatcgtcgaagaaaagagtcaaagatatt tgggaaattattgaggaaaatgatgattttgcgtgggatattgaagaattggttgaggca ggtcgtaaattgaatttttgtccatatttcgcgtctgtggataacatgtatcaagatgcc aatttaatattttgtccatacggctatctgattgatccggtagtgcgcagttcgagtaat ataaatttaaaagggcaagtgatcattttcgacgaagctcacaatatggaagatgaatgc tgtgagaaggcaagctttcaaattaccaaacaagaattagtcgatgctgtcgaatattta tcttctatcgaggagttggtacctgaaagcaagaaatctttacaggataattgtacagag ttggtgaaatctgtgattgaatggattgacaaaaagagtgtaattgaagaaatgacaaat cacagtgaaaagttttatacgaaaatttggtctggtcgtgcaatgtacgcagaattgcaa gagatgaagcttcattatgacgctggaaacattctccaaaaagctattcaaaagttcgac agtgtatttaaacctgacaattcattgaatgtcaccggaacaatatttgagaagaagcat gacaatcagcctctgacagttttggaaaaactgattttaatactgaaatatatttacaaa gattatcgtttaacaccgactgattcatatgattgctacagttacaagtttattttccat gatattagttcgtcagcgagatcagtcattctcgcatccggtactttggctcctttgaaa acgtatgcaaatgagctgggacttccttttcagtatttactcgaagcccctcacgtaata ttaccagatcgggtgtggatcggtgcaactggtgtgggtcccaaacatgtgccattgaaa gcaacttatcaattagcccagtcgacagaatttcaggatgaattgggcagattgctgatt gaaatttgcaaagtaacaccagatggtgtgttgtgctttttaccttcttatactttcatt gattgtttgctgacgcgttggaaaaaggttcctcctagttgtaatttccaagtgaacagc agtttgtggtctcagttgaacgtctacaaaatggttgtggtagaaccacgtaaaaatggc tctgatgtacgtttgattatggatcggtttactgaaacaatcaaagatcccaaaaaagta ggtccaaagtgcaatggtgctttgttgcttgccgtatatcgtggcaaaatatcagaaggt gtagattttgctgatcaacaagctcgagcagttgttaccgttggcataccgtatccggat atggaagatatgcgaatacgattgaagatacaatacaacaatgaacgtttgaagaatgct aagcgcattgcagaaatggcacctctaatatcaggtaatcagtggtaccaggcgcaagca ttcagagcgttgaatcaagctttgggtcgttgtttgcgacacaagctagattggggtgct cttttattggtcgattcacgctttcaaaatgctgaatattcttgcaatctttctacttgg atacgtaaaaatttgcgttgttacgatcgttttgaccaaatgatatgcaacttgcaaaca ttcgttgcacgtttcggcgcaaacaaaatcaacgaatga

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