Thamnophis sirtalis (common garter snake): 106541394
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Entry
106541394 CDS
T06107
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tsr04040
]
106541394
Ion channels [BR:
tsr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
106541394
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
Lustrin_cystein
IQ
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
106541394
NCBI-ProteinID:
XP_013912299
UniProt:
A0A6I9XDL5
LinkDB
All DBs
Position
Unknown
AA seq
2007 aa
AA seq
DB search
MEQPVLVPPGPDSFHYFTRESLAAIEQRIAAEKAKQSKQDHKDNDENGPKPSSDLEAGKS
LPFIYGDIPAGMVATPLEDLDPFYINTKTFIVLNRGKAIFRFSATPALYILTPFNPLRKV
AIKILVHSLFSMLIMCTILTNCVFMTLSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCI
DGFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCLYWNPPNATDNDTDIFNATFGEN
STLNATQFDWNAYIQDENNFYFLEGQNDALLCGNSSDAGQCPEGYFCIKAGRNPNYDYTS
FDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAM
AYDEQNQATMEEAEQKEAEFQQMLEQLKKHQEGVQAAAIAAATASAESNDPSVRGGTGGH
SESSSETSKLSSKSAKERRNRRKKRKQKEQCGGEEKDEDEFHRSESEESFRRKGCRFSIE
GNRLTLERKHSSPHQSLLSMRGSLFSPRRNSRTSLFSFRGRAKDIGSENDFADDEHSTFE
DNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVSLVGGPSV
PTSPVGQLLPEVIIDKPATDDNATTTETELKKRRSSSFHISMDFLEDPNLRDRAMSVASI
LTNTMEELEESRQKCPPCWYKFANIFLIWDCCPHWLKIKHVVNIIVMDPFVDLAITICIV
LNTLFMAMEHYPMTERFAEVLNVGNLVFTGIFTGEMFLKLVAKDPYYYFQEGWNIFDGFI
VTLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAI
IVFIFAVVGMQLFGKSYKECVCKIAKDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDC
MEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAMARI
DKGIDFMKRKMHEFIQKSFVKKQKALDETKPLEELHNKNTCISNHTIEICKEIDYFRDRN
GTTTSGIGTGSSVGKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDSE
ESKEKLNSSSSSEGSTVDIGLPAEEQAVVEPEEALEPEACFTEGCVQRFKCCQVSVEDGR
GKQWWSLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLISLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGNMFEVDEVANKSECESLILANETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRKVLEQPIYEDNLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKYQGMVFDFVTQQVFDISIMILICLNMITMMV
ETDDQSKQTEDILYRINFIFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMF
LAEIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFMITTSAGWDGLLAPILNSGPPD
CDPKKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSEFAAALEPPLHLPKPNKVQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMQSNPSKASYEPITTTLKRKQEELSAI
IIQRAYRRYRLAQTIKQASFLNKNKIEGGASQRIKDEFLMDKMNENSYTEKTDMTMSTAI
CPPSYDRVTKPVEEKHEKEGKDVQKKK
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggagcagccagtgcttgtaccaccaggtccggatagctttcactacttcactagagag
tctcttgcagctatcgaacaacgcattgctgccgaaaaagccaagcagtccaaacaagac
cataaagacaatgatgaaaatgggccaaaaccaagtagtgacttggaggctggcaaatca
ctgccatttatttatggtgacatccctgctggaatggttgctactcccttggaagacctg
gatccattttacattaatacaaaaacttttatagtattgaatagagggaaggcaattttc
cgattcagtgccacccctgccctatacattttaactcctttcaaccctcttagaaaagta
gctattaagattttggtacattcattattcagcatgctcattatgtgcactattttgacc
aactgtgtatttatgaccttaagtaacccccctgattggacaaagaatgtagaatataca
ttcacaggaatatatacctttgaatcccttataaaaataattgcaaggggcttttgtata
gatggtttcaccttcctcagagatccctggaactggcttgatttcactgtcattacattt
gcatatgtgacagagtttgtggacctgggtaatgtctcagcattgagaacattcagagtt
ctccgggcattgaaaacaatatcagtcatcccaggtctgaagacaattgtgggagctctc
attcagtctgtgaagaaactatccgatgtgatgattctgacagtattttgtctgagtgtc
tttgctctcataggactccagctgttcatgggcaacttgaggcataaatgcttgtattgg
aatccaccaaatgctacagataatgatactgatatatttaatgctacatttggagaaaac
agtacattgaacgctacccaatttgactggaatgcatacatacaagatgaaaataatttt
tattttttggaaggacaaaatgatgctttgctttgtggtaacagttctgacgcaggtcaa
tgtccagaaggctatttttgcataaaagctggaaggaatccaaactacgattatacaagt
tttgatacattcagctgggccttcttgtctctctttcgactgatgactcaggatttctgg
gaaaatctttatcagctgactctacgtgctgctggcaaaacgtacatgatcttttttgtc
ctggtgattttcttgggttctttctacctgatcaacttgatcctggctgttgttgccatg
gcttatgatgagcagaatcaagccaccatggaagaagctgagcagaaagaggcagagttc
caacagatgctggaacagctgaaaaaacatcaagaaggggttcaggcagcggcgattgct
gcagcaactgcatctgcagaatctaacgatcccagcgtaagaggtggaacggggggacat
tcagaaagctcatctgaaacatcaaaattgagttccaagagtgccaaagaaagaagaaat
agaaggaagaagagaaaacaaaaagaacaatgtggtggagaggaaaaagatgaagatgag
tttcatagatctgaatctgaagaaagtttcaggagaaaaggttgccgattctctattgaa
gggaataggttaacactagaacggaagcattcttctccccatcagtctttgctgagcatg
cgtggctcactattttccccacggcgcaacagcagaacaagccttttcagcttcagaggt
agagcaaaggatataggatcagagaatgactttgctgatgatgaacacagcacttttgaa
gataatgatagcagaagagattctctttttgtgccgcgcagacatggtgaacggcgcaac
agtaacattagtcaggccagtaggtcatccaggatgctggcagtgtttccagtgaatggg
aagatgcacagcactgtggattgcaatggggtggtttccttggttggtggaccatctgtt
cctacatcgcctgttggacagcttctgccagaggtgataatagataaaccagctactgat
gacaatgccacaacaacagaaacagaattgaaaaaaagaagatcgagttctttccatatt
tctatggactttttggaagaccccaacctaagagacagagccatgagtgtggctagtata
ctcacaaacactatggaagaacttgaagagtcacgacagaaatgcccaccttgctggtac
aaatttgcaaacattttcttaatctgggactgctgccctcattggctgaaaataaagcat
gttgttaacatcatagtgatggatccatttgttgacctcgctattacaatttgcattgtt
ttaaatacattgttcatggcaatggaacattatccaatgacagaaagatttgcggaagtc
cttaatgttggaaacttggttttcactggaatcttcacaggagaaatgtttcttaaacta
gtagccaaggatccatattattatttccaagaaggctggaatatttttgatggttttatt
gttacccttagtttggttgaactcggcctagcaaatgtggaaggactctcagttctccga
tcattcagactgttgcgagttttcaaattggctaaatcctggccaacattaaatatgctg
atcaaaattattggcaactctgttggtgctttgggaaatctgactttggtcctggccatc
attgtcttcatttttgctgtggttggtatgcagctctttggtaaaagctacaaggaatgt
gtgtgcaagattgcaaaagattgtgaactccctcgctggcacatgcatgattttttccac
tctttcttgatcgtgttccgagttctttgtggagaatggatagaaaccatgtgggactgt
atggaggttgcaggtcaagccatgtgccttacagtcttcatgatggttatggtgattgga
aatttagtggtgctgaatctctttttggccttgctcttgagctcatttagcgcagataac
cttgctgctacggacgatgataatgaaatgaacaatctccagattgcaatggcgaggatt
gataaaggaatagattttatgaaaaggaaaatgcatgagttcatccagaaatcctttgtc
aaaaagcaaaaagctctagatgaaaccaaacctcttgaggagctccacaataagaacacc
tgcatctctaaccacaccatagaaatttgcaaagagattgattattttagagatagaaat
ggaaccaccaccagtggcataggcaccggcagcagcgtgggaaaatatgtggtagatgaa
agtgattacatgtcgttcattaacaatccgagcctgacggtgactgtaccgatcgctgtt
ggagaatctgattttgaaaatttaaataccgaggaattcagtagtgagtctgattcggaa
gaaagcaaagaaaaactaaattcttctagctcatcagaagggagcacagttgatattgga
ctgcctgctgaagaacaagcagtggtagaacctgaggaagctcttgaacctgaagcttgt
tttacagaaggttgtgtacaaagattcaagtgttgtcaagttagtgtagaagatggaaga
ggaaagcaatggtggagtctcagaaaaacctgtttccgaatagttgaacacaattggttt
gaaaccttcattgtctttatgattctccttagtagtggtgctttggcctttgaagacata
tacatagaacagaggaaaactatcaagaccatgttggaatatgctgacaaagtcttcact
tatatcttcattcttgaaatgcttctgaaatgggtagcatatggataccaaacatacttt
actaatgcctggtgctggctggatttcttgattgttgatgtatctttgataagtttaaca
gcaaatgctctgggttattcagaacttggagccattaaatcccttaggacactgagagca
ttgagacctttaagagccttatcaagatttgaagggatgagggtggttgtgaatgccctt
cttggagcaattccatccatcatgaatgtgcttcttgtttgtcttatattctggctgatt
ttcagcatcatgggagtaaacttgtttgctggcaaattctaccactgtgttaatactaca
actggcaacatgtttgaagttgatgaagttgccaataagtctgagtgtgagagtctcata
cttgcaaatgaaactgccagatggaaaaatgtgaaagtcaactttgataacgtaggattt
gggtatctttctttactgcaagtagccacatttaaaggatggatggatattatgtatgca
gcagttgattcaagaaaagtgcttgaacagcctatctatgaagataacctttatatgtat
atttactttgttatctttatcatatttggatcattttttaccctgaatctatttattggt
gtcatcatagataacttcaatcaacaaaaaaagaagtttggaggccaagacatctttatg
acagaagaacagaaaaagtactacaatgcaatgaaaaaattggggtctaaaaagcctcag
aaacctatacctaggccagggaacaaatatcaaggcatggtgtttgattttgtgacccaa
caagtatttgacatcagtattatgattcttatctgccttaacatgatcaccatgatggta
gaaacagatgatcaaagtaaacaaacagaagatattctctaccgcattaattttatattt
attgtccttttcactggagaatgtgtcctcaaactaatttccctacgctattattatttc
acaattggatggaacatttttgattttgtggttgtcatcctttccattgtaggtatgttt
ttggcagagatcattgagaaatattttgtatcccccaccttgttccgagtaattcgactt
gccaggataggtcgaatcctgcgtctaatcaagggggcaaaggggatccgcactctgctt
tttgccttgatgatgtctctccctgccttgttcaacattggtctcctccttttcctggtc
atgttcatctacgccatatttggaatgtccaactttgcctacgtgaagagagaagttggc
attgatgacatgttcaactttgaaacttttggcaacagcatgatctgcctctttatgatc
accacctctgctggctgggatggcttgctagcccccatcctgaacagcgggcctccagac
tgcgaccctaaaaaagatcacccaggaagttccgtcaaaggagattgtggcaatccttcg
gttgggattttcttctttgtcagctacattatcatctcatttttagttgtagtcaacatg
tatattgctgtcattctggagaacttcggtgtggcaactgaagaaagtgccgaacctctg
agcgaggatgattttgagatgttttatgaggtctgggaaaagtttgacccagatgctaca
cagtttatggaatttgaaaaactttcagagtttgcagctgctctggagcctcctcttcac
ttacctaaacccaacaaggttcagcttattgcaatggatctgcccatggtaagtggtgac
agaattcactgcctcgatatattgtttgctttcaccaaacgtgttctgggggaaagtgga
gagatggacgctctccgcattcagatggaagaccgctttatgcagtcaaacccatccaaa
gcctcctatgagcccatcacaactaccttaaaaaggaaacaagaggagctgtcagctatc
attatccaacgggcttacaggcgttatcgtctggcacaaacaataaagcaggcttcattt
ttaaacaaaaacaaaatcgaaggaggggctagccaacgtattaaagacgaattcctcatg
gacaagatgaatgaaaactcttacaccgaaaagacagacatgaccatgtcaacagctatc
tgtccaccatcctatgaccgtgtaaccaagccagttgaagaaaaacatgaaaaggaaggc
aaagatgtacaaaagaaaaaataa
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integrated database retrieval system
