Thamnophis sirtalis (common garter snake): 106553594
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Entry
106553594 CDS
T06107
Symbol
DCHS2
Name
(RefSeq) protocadherin-23
KO
K16507
protocadherin-16/23
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106553594 (DCHS2)
Cell adhesion molecules [BR:
tsr04515
]
Cadherins
Cadherin related
106553594 (DCHS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
106553594
NCBI-ProteinID:
XP_013927607
UniProt:
A0A6I9YTG3
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MTDVFIGLLNQDIKLFYRGCKQAPERSNMERSDKIGWLFIGRTFKNKDRTFIEKVFYALR
VLMNNNHVIQTYAIRGISNAALNLPRKCSAQVYNLSLEVGEDLPADTLVGDISAGLPPGE
AHPGGFFLSEGSGESALLADFHIHPDTGIIRTARPLDRERTARYSFAAATLRGAIVQVEI
AVADANDHAPRFPRELVRLSVSELSPPGSAFRLPAARDPDEGSFGVRGYSLLPGDQDGSA
EEEEDPFFQVRYGAPSDPLDLLLLRRLDREQAATHRLLVEAWDGGSPRRSGRLRVELRVL
DENDNAPTFDRREYRAQLREDAPAGASVCRVFATDPDLGVNGEVRYALSRRQGDSSAAVY
FEVGERSGLLRLRRPLDRELRASHQLAVEARDGGALPEVATAWVAVEVLDVNDNPPVIQL
LYLTEAGAGVSEGARSGDYVARVSVSDPDEQPGGVALSLEGGEGAFSLRRSGGVGVYFLC
VEGPLDRETREAYELRLTAVDAGVPPLSARHVLTLRVADRNDQAPVFAQPRYRATVSEAA
SAGSVVLRLSASDADEPGSRNSQVRYALVPSQPHGELFLLDPLSGVLSLRGPLDREREAL
VQLWALARDLGAPPLSASCLVSVTVADANDNEPVFKRRVYSVSLAEHSEVGYCLLQVKAT
DQDSGHFGYIEYFLYNGFLSNEKPEAFDIDLNSGCIYVSQDIDREEDPSTYDFLVKAIDG
GGLSAQAFVHIVIEDINDNLPVFNPVIYVINISSHTQPGTEITKLLATDKDSGIYGTVTY
KLIPGYFSSLFKVDPSTGTVYLISALTNADCSSVLLTVSAQDGGGLRSDVDADVTVKIFQ
PAVAPVVFEESSYSFSIPEHAPEGTSVGTVKARKPLNFLDTVSYRISSGNSHGIFTVDSH
SGIIHTQKQLDHETHDHILFEVQSQLGNSSIFSSAQVNVTLIDINDNRPVFVMDYDQIYI
SQSTPPGTALYIAHAEDKDSGLNGLIHYAIVSSQSSIFSLDPALGILYLARDLNSHKQHE
HVVVHIRAEDHGNPSLSSVLILGVLIDKQKGSPVLIFEKLLYQVEVSERSCLGDRILQIR
ARKLNPYHISATLTYSLEHNIDSLPFKIDPETGVVYLRNPLDYEHLQAHSFRAFVTSSME
KSVQNASTLIIINVIDENDNPPVFLRDVYFIEVEERALPQGVIGTIKAIDKDSGRNGQLS
YFILSNENYFRINSNTGEIINWVALDYEQQVQHRLIVLVTDHGVPQLNATISVYISVMDL
NDNRPSFSQDLLRFKVLERQPAGTRVASIFAKDLDSGNNGIVLYSLSSEKSLGHFQIDNS
SGELITTKALSYSWHSNYRMVITAIDKGNPSFQGETVINIEVIPLVKGISHSSQNIRHFA
IPEDFRPSQLMGSLKLPDQHLYPNRKQHFIIPEEDSDIPFEIDNATGDLFLSKALDYEVM
SHYFFRVVVTDCLNNSPQNETVFLSVDVEDQNDHSPSFQNNFIVIGIEENVPIGTVVYTF
SARDGDGSFLNRNIQYSMDSNYLTENPFVIHPIYGTLITAVSLDREITPFFVLTVLASNQ
AVNLTEHNQCSLTAKIVILDVNDNIPSFFSSPVSYIREDAEVGSVAHHIIAHDPDQGMNG
QVTYLLSSNENHAFLIDKAT
NT seq
4921 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgtatttataggcctcttgaaccaggatatcaagctcttctatcgaggatgc
aaacaagctcctgaaaggtcaaatatggagagatcagacaagatcggctggttatttata
ggaaggaccttcaagaacaaagatcgcacatttatagaaaaagtcttttatgcgctgagg
gtccttatgaataacaaccacgtaatccaaacctacgccatccgaggaatcagcaatgca
gcactgaatctcccccggaagtgctcagcccaggtgtataacctcagcttggaagtgggc
gaagacctgccggctgacactctggtaggggacattagcgcggggctgccccctggggaa
gcccaccctggtgggtttttcttgtcggaaggcagcggggaatccgccctgctggcggat
ttccacatccacccggacaccggcatcatccgcaccgccaggcccctggaccgcgagcgg
acagcgcgctacagcttcgcggcggccacgctgagaggggcgatcgtgcaggtggaaatc
gccgtcgccgacgcgaacgaccacgcgccccgcttcccccgggagttggtgcgcctcagc
gtctccgagctcagcccgcccggcagcgctttccgcctgcccgccgcgcgcgatcccgac
gagggaagcttcggcgtccggggctactccttgctgccgggggaccaggacggctccgcg
gaggaggaggaagatccgtttttccaggtgcgctacggtgctccctccgaccctctggat
ctgctcttgttgagacggctggaccgggagcaggcggctacccaccggttgctggtcgag
gcttgggacggcggcagccctcgccggagcggacgcctccgggtagagctccgagtactg
gacgaaaacgacaacgctcccactttcgaccgacgcgagtatcgcgcccagctacgggaa
gacgcgccggcgggagcttccgtgtgtcgggttttcgccaccgacccggacctgggtgtt
aacggggaggtgcgttacgctcttagccgccgccagggagactcttctgcggcggtttac
ttcgaggtgggcgagcgcagcgggttgctccgtttgcgccggccgctggatcgcgagttg
cgcgctagtcaccaactggccgtggaagcgcgagacggcggcgccctgcccgaagtggcg
accgcctgggtggccgtggaagtcctcgacgtgaacgacaacccgccggtcattcagttg
ctctacctcaccgaggccggcgccggagtctccgaaggggcgcggtcgggggactacgta
gcccgcgtgtccgtctccgaccccgacgaacaaccgggcggcgtggcgctgagcctggaa
ggcggcgaaggcgccttttcgctgcggcgctccggcggcgtcggcgtctatttcctgtgc
gtggaaggtcccttagaccgggagacccgcgaagcttacgagctccgcttgacggccgtc
gatgccggcgtcccgccgctctccgcgcgccacgtgctgaccctccgcgtggccgaccga
aacgaccaggctccggtcttcgcgcagccccgctaccgagccaccgtctccgaagccgcg
tcggccggctcggtggtcctgcgcctcagcgcctcggacgccgacgagcccggctctcgc
aacagccaggtgcgctacgccttggtcccctcgcagcctcacggcgagcttttcctcctc
gacccgctcagcggcgtcctgagtctccgaggcccgctggatcgcgagcgggaagcgctg
gtgcagctgtgggcgctggcccgggacttgggcgcgccgcccctctcggcctcctgcctg
gtgagcgtcaccgtcgcggatgccaacgacaacgagcccgtcttcaaacgccgagtctac
agcgtgagcttggctgaacactccgaggtcggctactgcctcttgcaggtcaaagcaaca
gatcaagattcaggccattttggatacattgaatattttctttataatggattccttagc
aatgaaaaaccagaagcatttgacattgatttaaacagtggttgtatatacgtgtctcag
gatattgacagggaagaagatccatctacatatgattttttagtaaaagccattgatggg
ggtggactaagtgcccaagcttttgttcacatagtaattgaagatataaatgacaatctt
cctgtcttcaaccctgtaatttatgtgataaacatcagcagtcatacacagccaggaaca
gaaataactaaacttcttgctacagataaagattctgggatatatggaactgtgacatat
aaactgattcctggatatttttcttcccttttcaaagtggacccatctacaggaactgtt
tatttaatatcagccctgactaacgcagattgttccagtgtgctgctgactgtttctgct
caggatggtgggggtcttcggtctgatgttgatgcggatgtaactgtgaagatctttcaa
cctgctgtggctcctgttgtctttgaggagtcatcttacagcttttccatccctgaacat
gcccctgaaggaacttctgttggaacagtgaaagcaagaaagcctttgaatttcctggat
acagtttcttatagaatttcctctggcaattcccatgggatttttactgttgattctcac
agtggaatcatacacacccagaaacaacttgaccatgaaacccatgatcatatactcttt
gaagtgcagtcacaattgggaaactcttccatcttcagcagtgcccaggtcaacgtaact
ctgattgacatcaatgataaccgtccagtatttgtgatggattatgatcaaatatatata
tctcaaagcacgccacctggaacagctctttatattgctcatgcagaagataaagacagt
gggctcaatgggctcatccattatgccattgtaagcagtcagtcaagtatttttagtctt
gatccagctcttgggattctttaccttgctagagatctcaatagtcataagcagcacgag
catgtagtggtacacatcagagcagaagatcatggaaatccttccctgagctctgtgttg
attttgggagtgctaattgacaaacaaaaaggaagtcctgtgttgatttttgaaaagttg
ctgtatcaagtggaagttagtgaaagatcctgtctaggtgacagaatcctgcaaataagg
gcccggaagctaaacccctatcacatttctgctactcttacatactctttggaacataac
atagactctcttccttttaaaattgatccagaaacaggtgtggtttacttacgtaatcct
ttagactatgaacatttgcaagctcatagttttagagcttttgttactagctcaatggaa
aagtcagtgcaaaatgcaagcacattaataataatcaacgtaattgatgaaaatgataac
cctcctgtgtttcttcgtgatgtctactttattgaagttgaggaaagagcattaccccaa
ggtgtgattggcacaattaaagcaattgacaaggactctggaagaaatgggcagctctcc
tacttcatcttatcaaatgaaaactatttcagaatcaattccaatacaggggaaattata
aactgggtggccttagactatgagcagcaagttcagcaccgtttgattgttctggtaaca
gaccatggggtccctcaacttaatgctaccatatctgtctatatctcagttatggacctc
aacgacaaccgtccatctttctcccaggatctgctgcgtttcaaggttttagaaaggcaa
ccagcaggaacacgagtggccagtatatttgccaaagaccttgattctggaaacaatgga
atagtgctgtattcgttatcctcagaaaaaagtttaggtcactttcagattgacaacagt
agcggtgagttaataactaccaaagctctgtcatacagttggcattcaaactaccgaatg
gtaatcacggcaattgacaagggaaatccttcttttcaaggggaaacagtcatcaatatt
gaggtaatacctcttgtgaaaggaatttctcattcttctcaaaacatcagacattttgcc
ataccagaagattttagaccttctcagctcatgggctccttaaaactccctgatcagcat
ttatatcccaacagaaaacagcattttattatccctgaagaagattctgatattccattt
gagattgataatgctacaggcgatctctttctttctaaagcacttgattatgaagtaatg
tctcactacttcttcagagttgttgtaactgactgcctgaacaattctccacagaatgag
actgttttcctcagtgttgacgttgaagatcaaaatgaccactcaccttctttccaaaat
aacttcattgtaattgggatagaggaaaatgtgcccattggtactgtggtgtatacattt
agtgcaagagatggagacggtagttttttaaacagaaatattcagtattcaatggatagt
aattacttgacagaaaatccatttgtcatccatcctatttatggtaccttaattacagca
gtatccctggatcgagaaataactccattttttgtcctgacagtattggcttcaaatcag
gcggtaaacctgactgaacataaccagtgttcactgacagcaaaaattgtcatattagat
gtcaacgataacatccctagctttttttcatctcctgtttcctacattagagaggatgca
gaggtaggctcagtagcacatcacataatagcacatgatccagaccaaggaatgaatgga
caagtcacataccttctctcaagcaatgaaaaccatgcctttttgatagataaagctact
g
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