Thiohalobacter thiocyanaticus: FOKN1_2440
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Entry
FOKN1_2440 CDS
T05229
Name
(GenBank) ATP-dependent exonuclease V beta subunit
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ttc
Thiohalobacter thiocyanaticus
Brite
KEGG Orthology (KO) [BR:
ttc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ttc03400
]
FOKN1_2440
Enzymes [BR:
ttc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOKN1_2440
DNA repair and recombination proteins [BR:
ttc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FOKN1_2440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAZ94812
UniProt:
A0A1Z4VTT4
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All DBs
Position
2585059..2588445
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AA seq
1128 aa
AA seq
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MNSPLDATRPAANATVHASAGTGKTWLLVTRLMRLLLAGVEPGRVLAVTFTRKAAAEMLE
RLTERLRLLATVPDADLDPLLEQMGVAPEPELRRQARRLYETLLRADFNLRATTFHSVCQ
EILQRFPLEAGVPPGFELLEAEGDARDAAWDALYAEATAAPEGDIGRALDTLMDGCGGLG
SVQTALGSFLAHRIDWWAYTDGRDDPVAWAGERLREQLDIDPDTDPEQVFFNDLTCQRLQ
QFRDLLLLHPTDTHTRQAAAIDAALNTGTPAPTRIEALWPALLTQKGEPLSRKASKTLEK
KLGADGMERLLGLHTRLCEQFLDLLDARQRRTNWELNRAWYHAGARLLEQFQAIKRNQRQ
LDFSDLEWHAYQLLNRSEQAHWVQYKLDNRIDHLLVDEFQDTNPTQWRLLLPLLEELAAG
SERARSVFLVGDEKQSIYRFRRADSRLLGAASEWLEQHLASRRHSLTHSRRSAAAIIDCV
NRVFAQPELHSRMPHFEPHGTFHPHLWGRVELLPLIQAEAAPEAEPVPAPTGLRDPLRQP
RELPLDDRYYREGRQTAERIQALIAGGCLLEEGDRARPVRYGDILILLRSRTHAADYERA
LRDAGIPCLGTSRGALLDSLEARDLEALLQTLIAPHNNLALAQVLRSPLFAATDADLVRL
AGLKQGDWMARLSALADDPATPEALRRAADCLPRWDERVGRLPVHDLLDRVFFEGDVLAR
YAAATPAALRPQVLANLQRFLELALEIDSGRYPSLPRFLQQLSRLRERSDEAPDDAPPAA
GDRVRMLTIHGAKGLEAPVVLLLDAAAAERDRSAWQALVDWPASDARPRYFLLNPGQARR
DRISRDWQAAQQQAEAREDANLLYVALTRARQLLIVSGTAPARGSGSGWHDLIRTGLAPE
TQALDTPLVLETGVAPAAAANVATPAAAEAPAPDPRLARPLEFALPRDRLAPSRRNETIA
DSEGFDADGRLRGQAVHLLLEWLSAPAPISAGVALQRLAAWAGRDAMQDDLQAWLAEARA
LLAHPGLADLFDPARYEMAWKEVPLQYLDDGVLVEGIVDRLVRRADRLLLIDYKTHRLGT
APAAQHAASFQGQMRYYAAGARRLWPQLPIECGILYTHSRELVLLDID
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgaactcccctctggatgcgacccggccggcggccaacgccaccgtccatgcctcggcc
ggcaccggcaagacctggctgctggtcacccggctgatgcggctgctgctggcgggggtg
gagccgggccgggtcctggcggtgaccttcacccgcaaggccgccgccgagatgctggag
cggctcaccgaacgcctgcgtctgctggccacggtgccggacgcggacctcgatccgctg
ctggaacagatgggcgtggcacctgagccggaactccgccggcaggcccgccggctctat
gagaccctgctgcgcgccgacttcaacctgcgcgccaccaccttccattcggtctgccag
gagatcctgcagcgcttcccgctggaggccggggtcccgccgggcttcgaactgctggag
gccgaaggcgacgcccgcgacgccgcctgggatgccctctatgccgaggccaccgccgcg
cccgagggcgacatcggacgggcactggataccctgatggacggctgcggcggtctgggc
agcgtgcagacggcgctgggcagttttctcgcccaccgcatcgactggtgggcctacacc
gacggccgggacgacccggtcgcctgggccggggagcggctgcgcgaacaactcgatatc
gatccggacaccgatccggaacaggtcttcttcaatgacctgacctgtcagcggctgcag
cagttccgtgacctgctgctgctgcatccgaccgatacccacacccggcaggccgcggcc
atcgatgccgccctgaacaccggcacaccggcaccgacgcgcatcgaggccctgtggccg
gcgctgctgacgcagaaaggcgaaccgctcagccgcaaggccagcaagacgctggaaaag
aaactcggcgctgacggcatggaacggctgctgggactgcatacccggctgtgcgagcag
ttcctcgacctgctcgacgcccgccagcgccgcaccaactgggagctcaatcgcgcctgg
tatcatgccggcgcccggctgctggaacagttccaggccatcaaacgcaaccagcgtcag
ctggatttcagcgacctggaatggcatgcctatcagttattgaaccgcagcgagcaggcg
cactgggtacagtacaagctcgacaatcgcatcgatcacctgctggtcgacgagttccag
gacaccaaccccacccagtggcgcctgctgctgccgctgctggaggaactggccgccggc
agcgagcgggcgcgcagcgtgttcctggtcggtgacgaaaagcagtccatctaccgtttc
cgccgcgccgattcgcgcctgctcggcgcggccagcgaatggctggaacaacatctcgcc
agccgccgccacagcctgacgcactcccggcgttcggccgcggccatcatcgactgcgtg
aaccgggtcttcgcccagcccgaactgcacagccgcatgccgcacttcgaaccgcacggc
acctttcatccccatctgtggggccgggtcgaactgctgcccctgatccaggccgaggcc
gcacctgaagccgaaccggtgccggcacccaccgggttgcgcgatccgctgcgccagccg
cgggaactgccgctggatgatcgctactaccgcgaaggccgccagaccgccgagcgcatc
caggcgctcatcgccggcggctgcctgctggaggaaggcgaccgggcccgccccgtgcgc
tacggcgacatcctgatcctgctgcgcagccgcacccatgccgccgactacgaacgcgcc
ctgcgcgacgccggcatcccctgcctgggcacctcccgcggcgccctgctcgacagcctg
gaggcgcgcgacctggaggcgctgctgcagaccctgatcgcgccgcacaacaacctggcc
ctggcccaggtgctgcgctcgcccctgtttgccgccacggatgccgacctggtccgcctg
gccggactgaagcagggcgactggatggcccggctgagtgcactggccgatgatccggcc
acgccggaagccctgcgccgggccgccgactgcctgccgcgctgggacgaacgggtcgga
cggctgccggtgcatgacctgctggaccgggtcttcttcgagggggacgtgctggcgcgc
tacgccgcggccacgccggcggcgctgcggccgcaggtactggccaacctgcagcgattc
ctggaactggcgctggaaatcgacagcggccgctaccccagcctgccgcgcttcctgcag
cagctgagccgcctgcgcgaacgcagcgacgaggccccggacgacgccccgccggcggcg
ggcgaccgggtgcggatgctcaccatccacggcgccaagggcctggaggcaccggtggta
ctgctgctggatgccgccgcggcggaacgcgaccgcagcgcctggcaggcgctggtggac
tggccggcaagcgacgcgcgcccccgctatttcctgctcaacccgggccaggcgcggcgc
gaccgcatcagccgcgactggcaggcggcccagcagcaggccgaggcgcgcgaggacgcc
aacctgctgtacgtggccctgacccgggcgcggcagctgctgatcgtctccggcaccgcc
ccggcccggggcagcggcagcggctggcacgacctgatccgcaccgggctggcaccggag
acgcaagccctcgacacgccgctggtgctggagaccggcgtggcgccggctgcggcggcg
aatgttgcaacgccggcagcggccgaagcaccggccccggatccgcgcctggcccgaccg
ctggaatttgccctgccgcgcgaccggctggcgccgagccgccgcaacgagaccatcgcc
gacagcgagggtttcgatgccgacggccgcctgcgcggccaggcggtgcacctgttgctg
gagtggctgagcgcgccggccccgatcagcgcaggggtcgccctgcagcggctggccgcc
tgggcgggccgggatgccatgcaggacgacctgcaggcctggctggccgaggcccgcgcc
ctgctcgcccaccccggactggccgacctgttcgacccggcccgctatgaaatggcctgg
aaggaggtgccgctgcagtacctggacgacggcgtcctggtggagggcatcgtcgatcgg
ctggtgcgccgggccgaccggctgctgctcatcgattacaagacccatcggctgggcacc
gcgccggccgcgcagcatgccgcgtccttccagggccagatgcgttactatgccgccggc
gcgcggcgcctgtggccgcaactgcccattgaatgcggtatcctctacacccattcgcgc
gagttggtgctgctggatatcgattga
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