Thermus thermophilus HB8: TTHA0180
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Entry
TTHA0180 CDS
T00220
Symbol
TTHA0180
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ttj
Thermus thermophilus HB8
Pathway
ttj03030
DNA replication
ttj03430
Mismatch repair
ttj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ttj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TTHA0180 (TTHA0180)
03430 Mismatch repair
TTHA0180 (TTHA0180)
03440 Homologous recombination
TTHA0180 (TTHA0180)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttj03032
]
TTHA0180 (TTHA0180)
03400 DNA repair and recombination proteins [BR:
ttj03400
]
TTHA0180 (TTHA0180)
Enzymes [BR:
ttj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TTHA0180 (TTHA0180)
DNA replication proteins [BR:
ttj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TTHA0180 (TTHA0180)
DNA repair and recombination proteins [BR:
ttj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TTHA0180 (TTHA0180)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
LAGLIDADG_3
Intein_splicing
HHH_6
tRNA_anti-codon
HHH_3
Vint
T2SSK
Motif
Other DBs
NCBI-ProteinID:
BAD70003
UniProt:
Q5SLW3
LinkDB
All DBs
Position
1:complement(171503..177706)
Genome browser
AA seq
2067 aa
AA seq
DB search
MGRKLRFAHLHQHTQFSLLDGAAKLSDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKA
TEMGIKPILGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEG
FYEKPRIDREILREHAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKDRFFIE
IQNHGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPG
RWRFPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYRIPRFPL
PEGRTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEALAQVERE
AWERLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWARRNGVSV
GPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYV
RERYGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQ
VVPELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEGRP
VTQYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDDPKTFALLS
RGETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRHHGLEPVSY
SEFPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCLAEGSLVLDAAT
GQRVPIEKVRPGMEVFSLGPDYRLYRVPVLEVLESGVREVVRLRTRSGRTLVLTPDHPLL
TPEGWKPLCDLPLGTPIAVPAELPVAGHLAPPEERVTLLALLLGDGNTKLSGRRGTRPNA
FFYSKDPELLAAYRRCAEALGAKVKAYVHPTTGVVTLATLAPRPGAQDPVKRLVVEAGMV
AKAEEKRVPEEVFRYRREALALFLGRLFSTDGSVEKKRISYSSASLGLAQDVAHLLLRLG
ITSQLRSRGPRAHEVLISGREDILRFAELIGPYLLGAKRERLAALEAEARRRLPGQGWHL
RLVPPAVAYRISEAKRRSGLSWSEAGRRVAVAGSCLSSGLNLKRPRRYLFRHRLFLLGEA
FADPGLEALAEGQVLWDPIVAVEPAGKARTFDLRVPPFANFVSEDLVVHNSMGKKKVEEM
KSHRERFVQGAKERGVPEEEANRLFDMLEAFANYGFNKCLPARARVVDWCTGRVVRVGEI
VRGEAKGVWVVSLDEARLRLVPRPVVAAFPSGKAQVYALRTATGRVLEATANHPVYTPEG
WRPLGTLAPGDYVALPRHLSYRPSLHLEGHELDLLGFALAEGHLRHPSGVYLYTSSEEEL
AAMEEALRAFPNTRIRVVWRRGVAHVYVGRVDRRQEAGAVAFLRRMGLLGLDAKTKRLPE
AVFGLPPEEVARFLGRLWTGDGGVDPKGRLIHYATASKELAWGVQHLLLRLGLQSRLVEK
RFSGGYKGYAVYLLGGLEAARRFAETVGPYLVGKRRQDLEALLASWEKAGRSTRDVLPLA
FLEEVRAAVAEVAQGQVADLLREAGLAEGLLCLGRGRRGLSRATVGRLAALTGSLALLRL
AEAEVYWDRVEAVEPLGEEEVFDLTVEGTHTFVAEDVIVHNSHAAAYSLLSYQTAYVKAH
YPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPDVNRSGFDFLVQGRQILFGLSAV
KNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNKRTLESLIKAGALDGFGERARLL
ASLEGLLKWAAENREKARSGMMGLFSEVEEPPLAEAAPLDEITRLRYEKEALGIYVSGHP
ILRYPGLRETATCTLEELPHLARDLPPRSRVLLAGMVEEVVRKPTKSGGMMARFVLSDET
GALEAVAFGRAYDQVSPRLKEDTPVLVLAEVEREEGGVRVLAQAVWTYEELEQVPRALEV
EVEASLLDDRGVAHLKSLLDEHAGTLPLYVRVQGAFGEALLALREVRVGEEALGALEAAG
FRAYLLPDREVLLQGGQAGEAQEAVPF
NT seq
6204 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcaagctccgcttcgcccacctccaccagcacacccagttctccctcctggac
ggggcggcgaagctttccgacctcctcaagtgggtcaaggagacgacccccgaggacccc
gccttggccatgaccgaccacggcaacctcttcggggccgtggagttctacaagaaggcc
accgaaatgggcatcaagcccatcctgggctacgaggcctacgtggcggcggaaagccgc
tttgaccgcaagcggggaaagggcctagacgggggctactttcacctcaccctcctcgcc
aaggacttcacggggtaccagaacctggtgcgcctggcgagccgggcttacctggagggg
ttttacgaaaagccccggattgaccgggagatcctgcgcgagcacgccgagggcctcatc
gccctctcggggtgcctcggggcggagatcccccagttcatcctccaggaccgtctggac
ctggccgaggcccggctcaacgagtacctctccatcttcaaggaccgcttcttcattgag
atccagaaccacggcctccccgagcagaaaaaggtcaacgaggtcctcaaggagttcgcc
cgaaagtacggcctggggatggtggccaccaacgacggccattacgtgaggaaggaggac
gcccgcgcccacgaggtcctcctcgccatccagtccaagagcaccctggacgaccccggg
cgctggcgcttcccctgcgacgagttctacgtgaagacccccgaggagatgcgggccatg
ttccccgaggaggagtggggggacgagccctttgacaacaccgtggagatcgcccgcatg
tgcaacgtggagctgcccatcggggacaagatggtctaccgcatcccccgcttccccctc
cccgaggggcggaccgaggcccagtacctcatggagctcaccttcaaggggctcctccgc
cgctacccggaccggatcaccgagggcttctaccgggaggtcttccgccttttggggaag
cttcccccccacggggacggggaggccttggccgaggccttggcccaggtggagcgggag
gcttgggagaggctcatgaagagcctcccccctttggccggggtcaaggagtggacggcg
gaggccattttccaccgggccctttacgagctttccgtgatagagcgcatggggtttccc
ggctacttcctcatcgtccaggactacatcaactgggcccggagaaacggcgtctccgtg
gggcccggcagggggagcgccgccgggagcctggtggcctacgccgtggggatcaccaac
attgaccccctccgcttcggcctcctctttgagcgcttcctgaacccggagagggtctcc
atgcccgacattgacacggacttctccgaccgggagcgggaccgggtgatccagtacgtg
cgggagcgctacggcgaggacaaggtggcccagatcggcaccctgggaagcctcgcctcc
aaggccgccctcaaggacgtggcccgggtctacggcatcccccacaagaaggcggaggaa
ttggccaagctcatcccggtgcagttcgggaagcccaagcccctgcaggaggccatccag
gtggtgccggagcttagggcggagatggagaaggaccccaaggtgcgggaggtcctcgag
gtggccatgcgcctggagggcctgaaccgccacgcctccgtccacgccgccggggtggtg
atcgccgccgagcccctcacggacctcgtccccctcatgcgcgaccaggaagggcggccc
gtcacccagtacgacatgggggcggtggaggccttgggccttttgaagatggactttttg
ggcctccgcaccctcaccttcctggacgaggtcaagcgcatcgtcaaggcgtcccagggg
gtggagctggactacgatgccctccccctggacgaccccaagaccttcgccctcctctcc
cggggggagaccaagggggtcttccagctggagtcgggggggatgaccgccacgctccgc
ggcctcaagccgcggcgctttgaggacctgatcgccatcctctccctctaccgccccggg
cccatggagcacatccccacctacatccgccgccaccacgggctggagcccgtgagctac
agcgagtttccccacgccgagaagtacctaaagcccatcctggacgagacctacggcatt
cccgtctaccaggagcagatcatgcagatcgcctcggccgtggcggggtactccctgggc
gaggcggacctcctccggcggtgtttggcggagggaagtctggtcctggatgcggctacg
ggtcagagggtgcccatagagaaggtgcggcccggcatggaggtcttctccctcggcccc
gattaccgcctctaccgggtcccggtgctggaggttctggaaagcggcgtccgggaggtg
gtgcggctcaggacccggagcggccgcaccctagtcctcacccctgaccaccctctcctg
accccggaagggtggaagcccctttgcgacctgcccctgggtacgcccatcgctgtacct
gccgaacttcctgtggccggacatctcgccccacccgaagaacgggttaccctcttggcc
ttgctgctaggggacggtaacacgaagctctccggccgcagggggacgaggccgaacgcc
ttcttctactccaaggaccccgagctcctggccgcctatcggcggtgcgccgaggctttg
ggggccaaggtcaaagcctacgtccaccccaccacgggggtggtgaccttagccaccctg
gccccgaggcccggggcccaggatccggtgaagcgcctggtggtggaggccgggatggtg
gccaaggcagaggagaagcgggtacccgaggaggtgttccgctaccgcagggaggccttg
gccctcttccttggccgcctcttcagcaccgatggctccgtggagaaaaagcgcatctcg
tacagctcggccagcctaggtttggcgcaggacgtggcccacctcctcctccgcctggga
atcacgagccaactgcgctccaggggacctcgagcccacgaggttctgatctcgggccgg
gaggatatccttcgctttgctgagctcatcggcccctatctcttgggggctaagcgcgaa
cggttggctgccttggaggctgaagccagaagacgccttcctggccagggctggcacctt
cgcctcgtgcctcctgcggtggcctaccgcatctcggaggccaagagaaggagcgggctt
tcctggagtgaggcggggagaagggtcgccgtagcggggagctgcctctccagcggtctt
aacctcaagcgcccccgccgctacctcttccgccaccgcctcttcctcctgggggaggcc
tttgccgacccgggcctcgaggccttggcagaaggtcaggttctgtgggaccccatcgtg
gcggtagagcctgcgggaaaggcccgcacctttgatctccgggtgccccccttcgccaac
ttcgtgtccgaggaccttgtggtccacaactccatgggcaagaagaaggtggaggagatg
aagtcccaccgggagcgcttcgtccagggggccaaggaaaggggcgtgcccgaggaggag
gccaaccgcctctttgacatgctggaggccttcgccaactacggcttcaacaaatgcctc
cccgcccgggcccgggtggtggactggtgcaccgggagggtggtgcgcgtgggggagatc
gtccggggcgaggcgaagggggtctgggtggtttccctggacgaggcccgcctccgcctg
gtgccgcggcccgtggtggccgccttcccgagcggaaaggcccaggtctacgccctccgc
accgccacgggccgggtcttggaggccacggccaaccaccccgtctacaccccggagggg
tggcggcctttggggaccttggcgcctggggattacgtggccctgccccgccacctctcc
tatcggccttccctccacctggagggccacgagctggaccttttgggcttcgccctggcc
gaaggccatctccgtcacccttccggcgtttacctctatacctcctccgaggaggagctc
gccgccatggaggaggctttgcgggccttccccaacacccgcatccgggtggtctggcgc
cggggggtggcccacgtttacgtaggccgcgtggaccggaggcaagaggcgggcgcggtg
gccttcctgaggcggatggggcttctcgggcttgacgcgaagacgaagcgccttcccgag
gcggtcttcggcctacctcccgaggaggtggcccgctttttggggcggctttggaccggg
gacggcggggtggacccgaaggggaggctcatccactacgccaccgcctccaaggagctc
gcctggggagtgcagcacctcctcctgcgcctggggctccagtcccgcctggtggaaaaa
cgcttttccggggggtacaaggggtatgccgtttacctcctgggggggctggaggcggcc
cgccgcttcgccgaaacggtgggcccctaccttgtgggcaagcggcggcaagacctcgag
gcccttctcgcctcctgggaaaaggcgggccggagcactagagatgtcctccccctcgcc
ttcctggaggaggtgagggcggcggtggccgaggtggcccaagggcaggtggcggacctt
ctccgggaagcgggcttggccgaagggctcctctgcctcggcagggggcggcgggggctt
tcccgggccacggtggggcggcttgccgccctaacggggagcctggcccttctccgcctg
gccgaggccgaggtgtattgggaccgggtggaggccgtggagcccttgggggaggaggag
gtctttgacctcaccgtggaggggacccacacctttgtcgccgaggacgtcatcgtccac
aactcccacgctgccgcctacagcctcctctcctaccagaccgcctacgtgaaggcccac
taccccgtggagttcatggccgccctcctctccgtggagcggcacgactccgacaaggtg
gccgagtacatccgcgacgcccgggccatgggcatagaggtccttcccccggacgtcaac
cgctccgggtttgacttcctggtccagggccggcagatcctcttcggcctctccgcggtg
aagaacgtgggcgaggcggcggcggaggccattctccgggagcgggagcggggcggcccc
taccggagcctcggcgacttcctcaagcggctggacgagaaggtgctcaacaagcggacc
ctggagtccctcatcaaggcgggcgccctggacggcttcggggaaagggcgcggctcctc
gcctccctggaagggctcctcaagtgggcggccgagaaccgggagaaggcccgctcgggc
atgatgggcctcttcagcgaagtggaggagccgcctttggccgaggccgcccccctggac
gagatcacccggctccgctacgagaaggaggccctggggatctacgtctccggccacccc
atcttgcggtaccccgggctccgggagacggccacctgcaccctggaggagcttccccac
ctggcccgggacctgccgccccggtctagggtcctccttgccgggatggtggaggaggtg
gtgcgcaagcccacaaagagcggcgggatgatggcccgcttcgtcctctccgacgagacg
ggggcgcttgaggcggtggccttcggccgggcctacgaccaggtctccccgaggctcaag
gaggacacccccgtgctcgtcctcgccgaggtggagcgggaggaggggggcgtgcgggtg
ctggcccaggccgtttggacctacgaggagctggagcaggtcccccgggccctcgaggtg
gaggtggaggcctccctcctggacgaccggggggtggcccacctgaaaagcctcctggac
gagcacgcggggaccctccccctgtacgtccgggtccagggcgccttcggcgaggccctc
ctcgccctgagggaggtgcgggtgggggaggaggccttgggggccctcgaggccgcgggg
ttccgggcctacctcctgcccgaccgggaggtcctcctccagggcggccaggcgggggag
gcccaggaggcggtgcccttctag
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integrated database retrieval system
