Thermoanaerobacterium thermosaccharolyticum DSM 571: Tthe_0425
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Entry
Tthe_0425 CDS
T01299
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ttm
Thermoanaerobacterium thermosaccharolyticum DSM 571
Pathway
ttm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ttm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tthe_0425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttm03021
]
Tthe_0425
03400 DNA repair and recombination proteins [BR:
ttm03400
]
Tthe_0425
Enzymes [BR:
ttm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tthe_0425
Transcription machinery [BR:
ttm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tthe_0425
DNA repair and recombination proteins [BR:
ttm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tthe_0425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADL67994
UniProt:
D9TRU7
LinkDB
All DBs
Position
420857..424411
Genome browser
AA seq
1184 aa
AA seq
DB search
MFELKNFDSMKIGLASPEKIREWSRGEVKKPETINYRTLKPEREGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVICDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVIDPGETNLSKKQLLSEKEYREYLDKYGNKFKAGMGAESIKELLQ
EIDLEKLSKELKAEIRESTGQKRVRAIRRLEVVQAFLDSGNKPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLYQCGLPKE
MALELFKPFVMKRLVDKGIAQHIKSAKRMVEKVRPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLTVEAQAEARFLMLAANNIL
KPQDGKPVMTPTQDMVLGCYYLTGDEDGVKGEGRIFKDYEEALMAYQLGQINIHAKIKVR
MKREVNGEIKSKIIETTIGKLIFNSAIPQDLGFVDRTNPDTMFDLEISTLVDKSKLGKIL
DRVYRVHGPTKTAETLDKIKALGYKYSTKAALTVSVSDMVIPEEKKTLLNEADEAVKKID
AQFRRGLISEEERYESVIRTWNMTTEKVSDALMANLDKFNPIFMMAHSGARGSKNQIKQL
AGMRGLMANPAGRIIELPIRSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIIREDDCGTDEGIYVSEIKEGNEVIEKLSDRLSGRVSLEDIKDPNTGEVIVKK
NTMISEQDAEKIEELGIKRVKIRSLLTCKSKHGVCRMCYGRNLATGSQVEIGEAVGIIAA
QAIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAVISEIPGVVKINETK
KKREVVITDNENNISKTYLIPYGSRLKVQDGQYIEAGDELTEGSVNPHDILKIKGLFAVQ
TYLLQEVQKVYRLQGVEINDKHIEVIIRQMMRKIKVEDSGDTSMMPGELVDMFAFEEENR
KVQEKGLRPATGTRALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKEN
VIIGKLIPAGTGLSRYRNIVVKSVDEVGNEVSEAEDNNAEVNVK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagcttaaaaatttcgattcaatgaaaataggtcttgcttcaccagaaaagatt
agagaatggtcaagaggtgaagtaaaaaagcctgaaactataaactataggacattaaaa
cctgagagagaaggattgttttgcgaaaaaatatttggacctactaaagattgggaatgc
cattgtggtaaatataaaagagtgaggtacaaaggtgttatatgtgacagatgtggcgtt
gaagtaacgagatcaaaagttaggcgtgaaaggatgggacatattgagcttgctgcccct
gtttcacatatatggtatttcaaagggatacctagccgtatgggattaatacttgacatg
tcaccaagagcacttgaaaaagttttgtattttgcatcatatgttgtgattgatcctggt
gaaacaaatctatctaaaaagcagcttctaagcgagaaggaataccgcgaataccttgat
aaatatggaaataagtttaaagccgggatgggtgctgaatcaataaaggaacttttacag
gagatagaccttgaaaaattatcaaaggaattaaaagctgaaatcagggaatctactggt
caaaaacgcgttagagcaataagaagacttgaagttgtgcaagcatttttggattctggg
aataaacctgagtggatgatattagacgtcatacctgttattccacctgatttaagacca
atggttcaactagatggtggacgatttgcgacatcggatttaaatgatctttatagaagg
gttataaatagaaataacaggttaaagaggttgcttgatttaggtgcaccggatattata
gttagaaatgaaaaaagaatgcttcaggaagctgtagacgcactcatagacaatggcagg
agaggaagaccagtaacgggtccaggcaataggccacttaagtcattgtcagacatgcta
aaaggaaaacaagggagatttaggcaaaaccttctaggtaagagggttgactattctgga
cgttctgttattgtcgtaggacctgaacttaagctttaccaatgcggtcttcctaaagaa
atggctcttgagctttttaaaccatttgttatgaaaaggcttgttgataaaggaattgca
cagcatataaaaagcgcaaagagaatggttgagaaagtgcgcccggaagtgtgggatgtt
ttggaagatgtcataaaggagcaccccgttctattgaacagagcacctacattgcatcgt
ttaggtattcaagcatttgagcctgtattggtcgaaggcagagccataaagttgcatcca
ttggtatgtacggcttataatgccgactttgacggtgatcagatggctgttcacgttcca
ttgactgttgaggcacaggcagaggcaagattcttgatgttggctgctaacaacatatta
aagcctcaggatggaaaacctgttatgacacctacacaggatatggttcttggatgttac
tatttaacaggtgatgaagacggcgtcaagggtgaaggcagaatatttaaagattatgaa
gaagcattgatggcgtatcaattaggtcaaataaatattcatgctaagataaaagtaagg
atgaaaagagaagtcaatggcgagattaagtccaaaatcatagagactactattggaaag
ctcatatttaattctgctatacctcaggatttgggttttgtggacaggacaaatcctgat
accatgtttgatttagaaatatcaactcttgttgacaaatcaaaattgggaaaaatatta
gatagagtgtacagggtgcatggtccaacaaagacagctgagacgctggataaaatcaaa
gcattaggttataaatattctacaaaggctgcattgactgtcagtgtatctgatatggtt
atacctgaagagaaaaagactcttttaaatgaagcggatgaagcagtgaagaagatagat
gcccagtttaggcgtggtcttatttcagaagaagagagatatgaaagcgtaattagaact
tggaacatgacgacagaaaaagtaagcgatgctctgatggcaaacctagataaatttaat
cctatatttatgatggcgcattcaggagctagaggtagtaaaaaccaaataaagcagcta
gccggtatgagaggcttgatggcaaatccggcaggaaggataatcgaacttcctataaga
tccaactttagagagggcctcaatgtgctagaattcttcatatctacacatggcgcaaga
aagggtttggctgatacggccttgaggaccgctgactcagggtatttgacccgtaggctt
gtggatgttagccaagatgtgattatcagagaagatgattgtggaacagatgaaggaata
tatgtaagtgagattaaagaaggaaatgaagtaatagaaaagctttctgacaggttaagt
ggaagggtatcgttagaagatataaaagatcctaatactggcgaagtaatagtaaagaaa
aatacaatgatatcagagcaagatgctgaaaaaattgaggagttaggaattaagagagtt
aaaataagatcacttctaacatgtaaatctaagcatggcgtttgcaggatgtgctacggc
aggaacttagcgactggttcacaagtcgaaattggtgaggctgtcggcataattgcagca
caagctattggcgagcctggtacacagcttaccatgagaacattccacaccggcggtgtt
gctggtgccgatattacacaaggtttaccgagagtcgaagagctttttgaagcaaggaaa
ccgaaggggttagctgtgatttctgaaataccaggtgttgtgaaaataaatgagacgaaa
aagaagagggaagtcgtaattacagataacgaaaataatatttcaaagacatatctcata
ccttatggatcgaggttaaaagttcaggatggacaatacattgaagcgggcgatgaacta
acagaagggtctgtaaatccgcatgatattttgaagataaaaggtttgtttgcggttcag
acgtatttgttacaagaggttcaaaaagtatacagactacaaggtgttgaaataaatgac
aaacatattgaagttataatcagacagatgatgaggaagattaaagttgaggattctgga
gatacatcaatgatgcctggtgagcttgtggatatgtttgcgtttgaagaagaaaacagg
aaggttcaggaaaaaggattgaggccagctactggcactagggcacttttaggtattaca
aaagctgcactggcaacagattctttcttatctgctgcatctttccaagagactacaagg
gttttgactgatgccgcaataaaaggaaaagttgatccacttattggtttaaaggaaaat
gttattataggtaagctgatcccagcagggactggtttatcaaggtatagaaacatagtt
gtaaaatccgtcgatgaagtaggcaatgaggtcagtgaagcagaagataataatgcagaa
gttaatgtaaaataa
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integrated database retrieval system