KEGG   Thermoproteus tenax: TTX_1883Help
Entry
TTX_1883          CDS       T01641                                 

Gene name
lig1
Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ttn  Thermoproteus tenax
Pathway
ttn03030  DNA replication
ttn03410  Base excision repair
ttn03420  Nucleotide excision repair
ttn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ttn00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    TTX_1883 (lig1)
   03410 Base excision repair
    TTX_1883 (lig1)
   03420 Nucleotide excision repair
    TTX_1883 (lig1)
   03430 Mismatch repair
    TTX_1883 (lig1)
Enzymes [BR:ttn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TTX_1883 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     TTX_1883 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TTX_1883 (lig1)
DNA replication proteins [BR:ttn03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    TTX_1883 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     TTX_1883 (lig1)
DNA repair and recombination proteins [BR:ttn03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TTX_1883 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     TTX_1883 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     TTX_1883 (lig1)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: CCC82500
UniProt: G4RLQ5
LinkDB All DBs
Position
complement(1632272..1634050)
Genome map
AA seq 592 aa AA seqDB search
MEFSELAKVLAGIESTTQRTMMVKLLVNLFKKLGPDEIDKAIYIILGDVRPPWEGVELGI
AEKLCLRALSRASGVKLEELESLYQKTGDVGEAARKALSKRQAQTLLAFAGAKRAPLSIS
QVYDTFLKIARTTGEGSIDLKVSLLSSLFSQASPEEAKYIARFVVGKLRLGVADMTIIDA
LAEAFNVDEGQLEKAYNIHPDLGYLAKVVLERGQAGLAQVRVTPGVPVMPMLAQRLSTSH
EVLTKLGGAAICEYKYDGERAQIHIGPNGISIYSRRLENITHAYPDVVEAVRRSVSAKEA
IIEGEIVALDPDTGDILPFQELMHRKRKHEVEEAMREYPVKLNLFDVIYLDGEDLTDKPL
IYRRLKLSEIVRESEDVVIAKWALFDDEEKVDLFFHEAISMGMEGLVCKSPTSLYEMGAR
GWNWIKYKRDYRSEMSDTVDLVVVGAFYGRGKRAGLYGAFLMAAYDPKTDMFYTVCKVGS
GFTDADLKKMYQMLEPYKIDHRHPRVSSRMEPDVWFTPGIVLEIIGAEITLSPLHTCCQG
AIKPDVGLAIRFPRFTGRYRSDKGPEEATTVDELLEIYRNQKKVKLEGPATT
NT seq 1779 nt NT seq  +upstreamnt  +downstreamnt
atggagttctcggagttggccaaagttctggcgggcatagagtccacaactcagaggact
atgatggtgaagctgcttgtgaacctctttaagaagttgggccccgacgaaatagacaag
gccatatacattatactgggggacgtgaggccgccctgggagggcgtagagttgggcatc
gccgagaagctgtgtctgagggcgctctctagggcgtccggcgtcaagctcgaggagcta
gagtcgctgtatcagaagacgggggacgtcggcgaggccgccagaaaggcgctctccaaa
aggcaggcgcagacgctgttggcgttcgcaggcgccaagagggcccccctctctatctca
caagtctacgacacgtttttgaagatagcgaggaccaccggagaggggtcgatagatcta
aaggtctccctcctctcgtcgctcttctctcaagcctcgccggaggaggccaagtatata
gccagattcgtggtgggcaaactgcgcttgggcgtcgcagatatgaccataatcgatgcc
ctagccgaggccttcaacgtagacgaggggcaactggagaaggcctacaatatacatccg
gacctcggctatctggccaaggtagtcctcgagagaggacaggccggcctcgcgcaagtg
agagtcacgcccggcgtgcccgtgatgcccatgttagcccagaggctgagcacgtcgcac
gaggtcttgaccaagctggggggcgctgcaatatgcgaatataaatacgatggagagagg
gcgcagatacacattggcccaaacggcatctccatctacagccgccgcctggagaatata
acacacgcgtaccccgacgttgtggaggctgtgaggcgctctgtctcggccaaggaggcg
ataatcgagggcgagatcgtcgcgctggaccccgacactggggatatcctgcccttccaa
gagctcatgcacagaaagaggaagcacgaggtggaggaggcaatgagggagtacccggtg
aagcttaacctgttcgacgttatctacctagacggagaggatctgaccgacaaacccctc
atctaccgacgcctcaagctctccgagatagtcagagagagcgaggacgtagtaatagcc
aaatgggctttgttcgacgatgaagagaaagtggatctgtttttccacgaggcaatctcg
atgggcatggagggcctcgtctgtaaatctccgacctcactctacgagatgggggcccgg
ggctggaactggataaaatacaagcgcgattaccgaagcgagatgagcgacacagtagat
ctagtggtagtgggcgccttctacggcagagggaagagggccggtctctacggagccttc
ctcatggcggcctacgatcccaagaccgacatgttctacactgtgtgtaaagtgggcagc
gggttcactgacgcagatctgaaaaagatgtaccagatgttggagccctacaaaatagac
cacagacatcctcgggtttcgtcgcgtatggagcccgacgtctggttcacgcctggcatc
gtccttgaaataataggggccgagatcacgctctcgccgttgcacacgtgctgtcaaggg
gccataaagccggacgtagggcttgccatcagatttcccagatttactggccgctatagg
tcggacaaggggcctgaggaggccaccacagtggacgagcttctggagatatacaggaac
cagaaaaaggttaaactggaggggcctgctacgacttaa

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