KEGG   Tupaia chinensis (Chinese tree shrew): 102474595Help
Entry
102474595         CDS       T02978                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup03030  DNA replication
tup03410  Base excision repair
tup03420  Nucleotide excision repair
tup03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tup00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102474595 (LIG1)
   03410 Base excision repair
    102474595 (LIG1)
   03420 Nucleotide excision repair
    102474595 (LIG1)
   03430 Mismatch repair
    102474595 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tup03032]
    102474595 (LIG1)
   03400 DNA repair and recombination proteins [BR:tup03400]
    102474595 (LIG1)
Enzymes [BR:tup01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102474595 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     102474595 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     102474595 (LIG1)
DNA replication proteins [BR:tup03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    102474595 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     102474595 (LIG1)
DNA repair and recombination proteins [BR:tup03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     102474595 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     102474595 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     102474595 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR
Motif
Other DBs
NCBI-GeneID: 102474595
NCBI-ProteinID: XP_006142255
LinkDB All DBs
Position
Un
AA seq 930 aa AA seqDB search
MQRSIMSFFHPKKEGKAKKPEKETSSQSREVDSSSKVALKERNGVVPDGDSPVKRPGRKA
ARVLGSEGEEEDEVLTPTKGQKPALDSPQASPSSPATSPENSPSLSDTSPTDISPSGIPK
RRTARKQIPKRTIQDVLEEQSEDKARETKRKKEEEEAETPRESLTETQVTKKKEAEEGDQ
PTTPTMTLKTSTETPAESISEPGVTVKQEAQDEDKTKPPPQASKTLSSFFTPRKPAVKKE
VKEEESGKPSVKKEVKEEGSGVPKNEETTDPLDPACYNPAKNNYHPIEDACWKPGQKVPY
LAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPLDLLPVLYLSLNRLAPLQQGLELGV
GDAVLIKAVAQATGRQLESVRAEVAEKGDLGLVAENSRSTQRLMLPPPPLTTSGVLAKFR
DIARLSGGTSMARKVDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSL
TPPGQEFPPAVVDAGKGKTAEARKTWLEKQGMILKQTFCEVPDLDRIVPVLLEHGLERLP
EHCRLSPGVALKPMLASPTRGISQVLKRFEEAAFTCEYKYDGQRAQIHMLEGGEVKIFSR
NQEDNTGKYPDIISRIPKIKLSSVTSFILDTEAVAWDQEKKQILPFQVLTTRKRKEVDAS
EIQVQVCVYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIDE
FLEQSVKDSCEGLMVKTLDVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRG
KRAGQYGGFLLASYDADTEELQAICKLGTGFCDRELEEQHENLQDLVLPTPRSYVRVGGA
AAPDHWLEPRIVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVRYDKRLEEATT
SAEVASLYLKQSQIQNQQSSDSDSDFDFLC
NT seq 2793 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcattttttcaccccaagaaagagggtaaagcaaagaagcct
gagaaggagacatccagccaaagcagagaggtggactcatcctcaaaggtggcgctgaag
gagcggaatggagtggtgcccgatggtgactctccagtgaagagaccaggaaggaaggca
gcccgggtcctgggcagtgaaggggaggaggaggatgaagtcctcacccccaccaagggc
cagaagcctgctctggatagcccacaagcatccccttccagtcctgccacatctcctgaa
aacagcccttccctctctgacacctctcccacggacatctccccatcagggatcccaaag
cgtcgcacagctcggaagcagattccaaaacggacaattcaggatgtcctagaagagcag
agtgaggacaaggcccgagaaaccaagaggaagaaggaggaggaagaagcagagacccca
agagaaagcctcacagaaactcaagtgacaaagaagaaggaagcagaagagggggaccaa
cccacgacacccaccatgaccctaaaaacctctacagaaaccccagcagaaagcatttca
gagcctggggttactgtgaagcaggaagcacaggatgaggacaagactaaacctcccccg
caagcctccaagacgctcagcagtttcttcactcctcggaagccagcagtcaagaaggaa
gtgaaagaagaggagtcgggcaagccatcagtcaagaaggaagtgaaggaagaggggtcg
ggcgttccaaaaaatgaggagaccacagaccccctggatccagcctgctacaatcctgcc
aaaaacaactaccatcccattgaagatgcctgctggaaacctggccagaaggtcccatat
ttggctgtggcccggacgtttgagaaaatcgaggaggtttctgcccggctccggatggtg
gagacgctgagcaacttgttgcggtccgtggtggccctgtcacccctagacctcctccct
gtcctctacctcagtctcaaccgcctcgcaccactccagcaaggcctggagctcggtgtg
ggtgatgctgtcctcatcaaggcagtggctcaggccacaggtcgccagctggagtccgtc
cgagccgaggtggccgagaagggtgacttggggctggtggctgagaacagccgcagcact
cagagactcatgctgcctccaccaccgctcaccacctctggggtccttgccaaattccgt
gacattgcccggctctccggtggcacttctatggccagaaaggtggacatcatcaaaggc
ctctttgttgcctgccgccactcagaagcccgattcattgccaggtccctgagtggacga
cttcgccttggactggcagagcagtcagtgctggctgccctcgctcaggctgtgagcctc
acacccccaggccaagaatttcctcctgctgtggtggatgctgggaagggcaagacagca
gaggccagaaagacgtggctggagaagcaaggcatgatcttgaagcagacattctgcgag
gtgcctgacctggaccgaattgtccccgtgctgctggagcatggcctggagcgtctcccg
gagcactgcaggctgagcccaggggtcgccctgaaaccaatgttggccagtcccacgcgg
ggcatcagccaggtcctgaaacgcttcgaggaggcagctttcacttgcgagtacaaatat
gatgggcagagggcacagatccacatgctggaaggcggcgaggtgaagatcttcagcaga
aatcaagaagataacaccgggaagtaccctgacatcatcagccgcatccccaagattaag
ctctcgtcggtcacatcttttatcctggacactgaagctgtggcttgggaccaggaaaag
aagcagatcctgccattccaagtgctcaccacccgcaaacgcaaggaggtggacgcttcg
gagatccaggtgcaagtgtgtgtgtacgccttcgatctcatctacctcaacggagagtcc
ctggtacgtgagcccctttcccgacgccggcagctgctccgggagaactttgtggagaca
gagggtgagtttgtcttcgctacctccctggacaccaaggataccgaacagatcgacgag
ttcttggaacagtcagtcaaagactcctgcgaggggctgatggtgaaaaccttggatgtc
aatgccacctacgagatcgctaagagatcacacaactggctcaagctgaagaaggactac
ctcgatggcgtgggtgatacactggacctcgtggtgatcggtgcctaccttggccgggga
aagcgagctggccagtatgggggcttcctgctggcctcctacgatgcagacactgaggag
ctacaggccatatgcaagctcggaactggcttctgcgatcgcgagctggaggaacagcac
gagaacctccaggacctggtgctgcccaccccacgctcctacgtgcgggtaggtggtgcc
gccgcccccgaccactggctggagcccagaattgtgtgggaggtgaagtgtgccgacctc
tccctgtcccccatctaccctgctgcccggggcctggtggatagtgagaaagggatctct
cttcgcttccctcggtttatacgagtccgttacgataaaaggctggaggaggccaccacc
agtgccgaggtggcctctctgtacctgaagcagagtcagatccagaaccagcagagctca
gactcagactctgacttcgattttctctgctaa

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